MantisBT - MEGA
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0001008MEGA[All Projects] Feedbackpublic2018-11-20 12:432019-01-07 08:54
guest 
gstecher 
normalminorhave not tried
resolvedno change required 
 
 
Noa
Ziklo
nziklo@chori.org
nziklo@chori.org
0001008: Tree branches are too short
Hello,
I've been trying to build trees and recently the branches are very short, so it is hard to see how the different clusters are grouped.
I've been using the same parameters as always, and it seems to be a problem now with all my trees regardless to the parameters I'm entering.
I can only see the clusters when I choose "compute condensed tree", however, this is not my preferable appearance for the tree in my publication.

Appreciate your help.
Many thanks
Noa Ziklo, PhD


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Issue History
2018-11-20 12:43guestNew Issue
2018-11-20 13:41gstecherNote Deleted: 0001051
2019-01-07 08:54gstecherNote Added: 0004167
2019-01-07 08:54gstecherStatusnew => resolved
2019-01-07 08:54gstecherResolutionopen => no change required
2019-01-07 08:54gstecherAssigned To => gstecher

Notes
(0004167)
gstecher   
2019-01-07 08:54   
Hi Glen!
Thank you so much, I got a nice looking tree again.
I didn't know you have to take stop codons off the alignment, and using muscle worked this time.
Last few times I aligned the sequences it did not distinguished between several different strain- I think it is because I did not choose "use all sites".
Anyway, thank you so much for your help!
Hope you will have great holidays and Merry Christmas!

Kind regards
Noa