MantisBT - MEGA |
| View Issue Details |
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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000103 | MEGA | Calculation Error | public | 2016-03-23 13:33 | 2016-03-23 13:33 |
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| Reporter | guest | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | |
| Platform | PC | OS | Windows | OS Version | 7 |
| Product Version | | |
| Target Version | | Fixed in Version | | |
| First Name | Formijn |
| Last Name | van Hemert |
| Email | f.j.vanhemert@amc.uva.nl |
| Confirm Email | f.j.vanhemert@amc.uva.nl |
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| Summary | 0000103: Frameshift in nts composition calculation |
| Description | I use MEGAv6 presently and almost have used any MEGA version fruitfully.
I noticed two things:
1. Calculation of the nucleotide composition of a CODING sequence (f.i. starting with AUG) generated frame-shifted data per codon position; see the attached file, of which the MEGA data has been copied directly from the MEGA output spreadsheet.
2. Frame translation is possible in various MEGA screens. I noticed that in one of the options (cannot remember which) introduction of a single gap just upstream of AUG is needed for proper frame translation.
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| Steps To Reproduce | Try f.i. the sequence copied from the attached spreadsheet. |
| Additional Information | The two bugs may be related. |
| Tags | No tags attached. |
| Relationships | |
| Attached Files |  chimp_T1.fasta (794,699) 1969-12-31 17:33
https://megasoftware.net/mantis_bt/
 HKUSpikeNucCompCodons.xlsx (122,788) 2016-03-23 13:33
https://megasoftware.net/mantis_bt/ |
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| Issue History |
| Date Modified | Username | Field | Change |
| 2016-03-23 13:33 | guest | New Issue | |
| 2016-03-23 13:33 | guest | File Added: HKUSpikeNucCompCodons.xlsx | |