MantisBT - MEGA |
| View Issue Details |
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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0001148 | MEGA | Distance Data Explorer | public | 2019-03-12 00:09 | 2019-03-18 08:18 |
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| Reporter | guest | |
| Assigned To | gstecher | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | resolved | Resolution | no change required | |
| Platform | PC | OS | Windows | OS Version | 7 |
| Product Version | | |
| Target Version | | Fixed in Version | | |
| First Name | Zhentao |
| Last Name | Cheng |
| Email | zhentao.cheng0123@gmail.com |
| Confirm Email | zhentao.cheng0123@gmail.com |
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| Summary | 0001148: With the increase in the number of sequences, the pairwise distances are different.(MEGA 7) |
| Description | While I was calculating the pairwise distances of a FASTA file which including 44 families and 870 sequences, I found if I calculate every family separately, the pairwise distances of same sequences may be different.
For example, the distance between “Cinara pilicornis|ACEA154-14” and “Cinara pilicornis|GBMHH3689-14” is 0.036 in “Aphididae-14.fas” (including 44 families and 870 sequences) and 0.064 in ”Cinara pilicornis.fas” (only one family, 30 sequences). |
| Steps To Reproduce | Input Data(Data Type: "Nucleotide Sequences" )
Select Genetic Code ("Standard")
Compute Pairwise Distances(Variance Estimation Method:"None";Substitutions type:"Nucleotide";Model/Method:"Kimura 2-parameter model")
Export to CSV formatted file(Export Type:"Column") |
| Additional Information | MEGA Version 7.0.26 |
| Tags | No tags attached. |
| Relationships | |
| Attached Files |  Upload File.rar (87,639) 2019-03-12 00:09
https://megasoftware.net/mantis_bt/ |
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| Issue History |
| Date Modified | Username | Field | Change |
| 2019-03-12 00:09 | guest | New Issue | |
| 2019-03-12 00:09 | guest | File Added: Upload File.rar | |
| 2019-03-18 08:04 | gstecher | Note Deleted: 0001059 | |
| 2019-03-18 08:04 | gstecher | File Deleted: ANTcrustaceans_Complete5.mas | |
| 2019-03-18 08:18 | gstecher | Note Added: 0004207 | |
| 2019-03-18 08:18 | gstecher | Status | new => resolved |
| 2019-03-18 08:18 | gstecher | Resolution | open => no change required |
| 2019-03-18 08:18 | gstecher | Assigned To | => gstecher |