MantisBT - MEGA
i use the command :
./megacc -a /home/fmm/data/seq/infer_ML_amino_acid.mao -d ready.fasta -o home/fmm/data/seq/
but it stop at :
Executing analysis:
99% Computing distance matrix
i do not know why
Build#: 10190812-x86_64
0% Organizing sequence information
0% 08/27/2019 09:41:37 PM
Using the following analysis options:
No. of Taxa 518
Analysis Phylogeny Reconstruction
Statistical Method Maximum Likelihood
Test of Phylogeny None
No. of Bootstrap Replications Not Applicable
Substitutions Type Amino acid
Model/Method Jones-Taylor-Thornton (JTT) model
Rates among Sites Uniform Rates
No of Discrete Gamma Categories Not Applicable
Gaps/Missing Data Treatment Use all sites
Site Coverage Cutoff (%) Not Applicable
ML Heuristic Method Nearest-Neighbor-Interchange (NNI)
Initial Tree for ML Make initial tree automatically (Default - NJ/BioNJ)
Branch Swap Filter None
Number of Threads 11
Has Time Limit False
Maximum Execution Time -1
datatype snProtein
MissingBaseSymbol ?
IdenticalBaseSymbol .
GapSymbol -
Start time: 08/27/2019 09:41:37 PM
Executing analysis:
99% Computing distance matrix
ready.fasta (1,010,784) 2019-08-27 06:59https://megasoftware.net/mantis_bt/