MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0001583MEGADistance Data Explorerpublic2019-11-20 13:152023-04-14 19:01
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformMacOSOS XOS Versionother
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First Namecarla
Last Namemavian
Emailcmavian@ufl.edu
Confirm Emailcmavian@ufl.edu
Summary0001583: Diversity subpop not working
DescriptionI wanted to calculate diversity between and within three sub populations I have in a fasta aln. I defined the groups and successfully calculated mean between and within genetic distance, but failed calculated diversity. it does not recognized the groups as sub-pop. why this problem? am I not defining correctly the sub-pop by using the groups?
Steps To Reproduce
Additional InformationI attach fasta file and write here the group_names to reproduce the three groups (Haiti, Americas, outgroup) as I can't attach 2 files.
KY558993_BR_2016=Haiti
KY558990_BR_2016=Haiti
KU744693_VE-CN_Am_2016=Haiti
MH063260_CU_2017=Americas
MH063261_CU_2017=Americas
MH063262_CU_2017=Americas
MH063264_CU_2017=Americas
MH063265_CU_2017=Americas
MH063259_CU_2017=Americas
MF438286_CU_2017=Americas
EU545988_FM_2007=outgroup
HQ234499_MY_1966=outgroup
KJ776791_PF_2013=outgroup
KR872956_BR_2015=Haiti
KU179098_ID_2014=outgroup
KU312312_SR_2015=Americas
KU321639_BR_2015=Haiti
KU365779_BR_2015=Americas
KU497555_BR_2015=Americas
KU509998_HT_2014=Haiti
KU527068_BR_2015=Haiti
KU681081_TH_2014=outgroup
KU707826_BR_2015=Americas
KU729217_BR_2015=Americas
KU729218_BR_2015=Americas
KU758877_GF_2015=Americas
KU761561_CN_2016=outgroup
KU761564_CN_Am_2016=Americas
KU820899_CN_2016=outgroup
KU866423_CN_2016=outgroup
KU926309_BR_2016=Americas
KU940224_BR_2015=Americas
KU940228_BR_2015=Americas
KU955590_CN_Am_2016=Americas
KU955593_KH_2010=outgroup
KU991811_IT_2016=Americas
KX051560_TH_2013=outgroup
KX051563_HT_2016=Haiti
KX056898_CN_Am_2016=Americas
KX117076_CN_2016=outgroup
KX156775_PA_2015=Americas
KX185891_CN_2016=outgroup
KX197192_BR_2015=Haiti
KX377336_MY_1966=outgroup
KX421195_NI_2016=Americas
KX447509_PF_2013=outgroup
KX447510_PF_2013=outgroup
KX447511_PF_2014=outgroup
KX447513_PF_2013=outgroup
KX447514_PF_2014=outgroup
KX447515_PF_2013=outgroup
KX447516_PF_2014=outgroup
KX447517_PF_2014=outgroup
KX447519_PF_2013=outgroup
KX447520_PF_2014=outgroup
KX447521_PF_2014=outgroup
KX601167_MY_1966=outgroup
KX694533_MY_1966=outgroup
KX766028_DO_2016=Americas
KX811222_BR_2016=Americas
KX830930_BR_2016=Americas
KY003153_IT_2016=Americas
KY003154_IT_2016=Americas
KY014297_BR_2016=Americas
KY014301_BR_2016=Americas
KY014307_BR_2016=Americas
KY014313_BR_2016=Americas
KY075934_US_2016=Americas
KY120352_KR_2016=outgroup
KY120353_KR_2016=outgroup
KY126351_TW_2016=outgroup
KY241687_SG_2016=outgroup
KY241691_SG_2016=outgroup
KY241695_SG_2016=outgroup
KY241708_SG_2016=outgroup
KY241720_SG_2016=outgroup
KY241755_SG_2016=outgroup
KY241777_SG_2016=outgroup
KY241788_SG_2016=outgroup
KY272987_TH_2016=outgroup
KY325466_US_2016=outgroup
KY325468_US_2016=Americas
KY325475_US_2016=Americas
KY325477_US_2016=Americas
KY328290_CN_2016=outgroup
KY415986_HT_2014=Americas
KY415987_HT_2014=Americas
KY415988_HT_2014=Americas
KY415989_HT_2014=Americas
KY441401_BR_2016=Americas
KY441402_BR_2016=Americas
KY558999_BR_2016=Americas
KY559001_BR_2015=Americas
KY559003_BR_2015=Americas
KY559004_BR_2016=Americas
KY559006_BR_2016=Americas
KY559010_BR_2016=Americas
KY559011_BR_2016=Americas
KY559012_BR_2016=Americas
KY559013_BR_2016=Americas
KY559014_BR_2016=Americas
KY559015_BR_2016=Americas
KY559018_BR_2016=Americas
KY559019_BR_2016=Americas
KY559024_BR_2016=Americas
KY559027_BR_2016=Americas
KY559032_BR_2016=Americas
KY631492_BR_2016=Americas
KY693676_HN_2016=Americas
KY693680_VE_2016=Americas
KY766069_PF_2013=outgroup
KY785410_BR_2016=Americas
KY785420_DO_2016=Americas
KY785429_BR_2016=Americas
KY785433_BR_2016=Americas
KY785439_BR_2016=Americas
KY785450_BR_2016=Americas
KY785455_BR_2016=Americas
KY785463_DO_2016=Americas
KY785464_PR_2016=Americas
KY785479_BR_2016=Americas
KY817930_BR_2016=Americas
LC191864_JP_2016=outgroup
LC219720_JP_2016=outgroup
MF036115_CN_2016=outgroup
MF073359_BR_2015=Americas
MF098766_RU_2016=Americas
MF167360_CN_Am_2016=Americas
MF352141_BR_2015=Haiti
MF384325_HT_Ae_2016=Americas
MF574563_CO_2015=Americas
MF574578_CO_2016=Americas
MF783073_HT_Ae_2016=Haiti
MF794971_EC_2016=Americas
MF801389_HN_2016=Americas
MF801403_MX_2016=Americas
MF801420_MX_2016=Americas
MF988734_SG_2017=outgroup
MG548661_TH_2016=outgroup
MG807647_TH_2017=outgroup
MG827392_PF_2013=outgroup
MH013290_TH_2017=outgroup
MH119185_TH_2016=outgroup
MH157201_MX_2016=Americas
MH255601_SG_2016=outgroup
MH368551_KH_2016=outgroup
MH513600_BR_2015=Americas
MH675620_PR_2016=Americas
MH675623_PR_2016=Americas
MH882528_BR_2016=Americas
MH882530_BR_2016=Americas
MH882532_BR_2016=Americas
MH882534_BR_2016=Americas
MH882538_BR_2016=Americas
MH882539_BR_2016=Americas
MH882540_BR_2016=Americas
MH882543_BR_2016=Americas
MH882545_BR_2016=Americas
MH882547_BR_2016=Americas
MH882548_BR_2016=Americas
MK028857_PR_2015=Americas
MK028859_PA_2015=Americas
MK049248_CO_2016=Americas
MK049249_CO_2016=Americas
MK238037_IN_2018=outgroup
MK238038_IN_2018=outgroup
MK269360_US_2016=Americas
MN190155_CN_2019=outgroup
NC_035889_BR_2015=Haiti
TagsNo tags attached.
Relationships
Attached Files? zika_169_aln.fasta (1,739,204) 2019-11-20 13:15
https://megasoftware.net/mantis_bt/
Issue History
Date ModifiedUsernameFieldChange
2019-11-20 13:15guestNew Issue
2019-11-20 13:15guestFile Added: zika_169_aln.fasta
2022-03-08 07:50guestNote Added: 0005081
2023-04-14 19:01guestNote Added: 0006782

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