MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0001756MEGA[All Projects] Feedbackpublic2020-02-05 09:252020-02-07 07:29
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product Version 
Target VersionFixed in Version 
First NameClair
Last NameGyesi
Emailmameakosua@hotmail.co.uk
Confirm Emailmameakosua@hotmail.co.uk
Summary0001756: What is the algorithm used to calculate conservation
DescriptionCould the website please be updated with information explaining what algorithm is used in the 'Sequence Data Explorer' to identify and highlight conserved regions in a protein multiple sequence alignment?
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Date ModifiedUsernameFieldChange
2020-02-05 09:25guestNew Issue
2020-02-07 07:29gstecherNote Added: 0004404
2020-02-07 07:29gstecherStatusnew => resolved
2020-02-07 07:29gstecherResolutionopen => no change required
2020-02-07 07:29gstecherAssigned To => gstecher

Notes
(0004404)
gstecher   
2020-02-07 07:29   
Hi Clair,

I am writing in response to your question regarding the MEGA software. There is no algorithm that is used to highlight conserved sites in the Sequence Data Explorer. A given site is either conserved (constant) or it is not.

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Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu