MantisBT - MEGA
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0001792MEGA[All Projects] Feedbackpublic2020-02-24 00:422020-02-24 08:04
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gstecher 
normalminorhave not tried
resolvedno change required 
 
 
Sam
Chong
thchong@connect.ust.hk
thchong@connect.ust.hk
0001792: Question about multiple core
I had finish the alignment using mafft.
I would like to plot phenology tree using megacc.
As the file is extremely large, i try to use cluster resources to do it.
the Following is my command.
/home/XXXXX/Software/MEGACC/megacc -a /home/XXXXX/WARS_mafft_data/infer_ML_nucleotide_wars.mao -d /home/XXXXX/WARS_mafft_data/6_wars_plus_other_output.fasta -o 6_wars_plus_other_output.meg

I set thread to 96(for 48 cores), but the program only able to use one core. How can i use all core?
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Issue History
1969-12-31 17:33agaskyNote Added: 0001557
1969-12-31 17:33agaskyDuplicate ID0 => 1791
1969-12-31 17:33agaskyStatusnew => resolved
1969-12-31 17:33agaskyResolutionopen => fixed
1969-12-31 17:33agaskyAssigned To => agasky
2020-02-24 00:42guestNew Issue
2020-02-24 08:01gstecherNote Deleted: 0001557
2020-02-24 08:04gstecherNote Added: 0004407
2020-02-24 08:04gstecherStatusnew => resolved
2020-02-24 08:04gstecherResolutionopen => no change required
2020-02-24 08:04gstecherAssigned To => gstecher

Notes
(0004407)
gstecher   
2020-02-24 08:04   
Hi Sam,

I am writing in response to your question regarding the MEGA software. MEGA is not programmed for use on computing clusters. You can specify the number of threads MEGA can use when generating an MAO file but MEGA will only execute on one cluster node.

--
Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu