MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000180MEGA[All Projects] Feedbackpublic2016-05-27 01:032016-05-27 01:03
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformOSOS Version
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameJiaqi
Last NameWu
Emailwujiaqi06@gmail.com
Confirm Emailwujiaqi06@gmail.com
Summary0000180: Codon Error
DescriptionIn previous version of Mega, Mega 5, if we translate codon in to pep, and choose some of the sequence of pep, and go back to CDS, Mega 5 can correctly find the DNA sequence which is the amino acid which I choose; however, in Mega6 and Mega 7, if I choose the amino acid sequence and go back to see the DNA, there are 2 codon shift, the codon frame is wrong. If you could fix this bug, it will greatly help our work. Thank you very much!
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Date ModifiedUsernameFieldChange
2016-05-27 01:03guestNew Issue

Notes
(0000097)
gstecher   
1969-12-31 17:33   
This appears to happen only when I create a new alignment using sequences I pull from GenBank.
(0000098)
gstecher   
1969-12-31 17:33   
It seems to happen when I create a new alignment in general and the sequences for the new alignment can come from any source to reproduce the error.
(0000099)
gstecher   
1969-12-31 17:33   
I found the problem. When MEGA is asked to open up the new file it does not recieve a file path with the .meg extension concatenated on to the file. It only takes the filname as entered by the user and the user is unlikely to add the .met extension.
(0000100)
Nikita Vikhrev   
1969-12-31 17:33   
Fixed. I will send you the source code. Thanks.