MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0001819MEGASequence Data Explorerpublic2020-03-05 02:192023-04-14 19:10
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformPCOSWindowsOS Version10
Product Version 
Target VersionFixed in Version 
First NameJens
Last NameRohwer
EmailJens.Rohwer@uni-hamburg.de
Confirm EmailJens.Rohwer@uni-hamburg.de
Summary0001819: NEXUS file not correctly exported
DescriptionVersion 10.0.5. When we export a partitioned data set as interleaved NEXUS file, the bases of the last block of each partition are not exported.
Steps To ReproduceCreate partitions in any dataset.
Export the data as Nexus file, interleaved, 40 sites per line.

Blocks of <40 sites appear as blank in the exported file, i.e. no bases behind the taxon names.
Additional Information
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Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user19Statusnew => resolved
1969-12-31 17:33user19Resolutionopen => fixed
1969-12-31 17:33user19Assigned To => user19
1969-12-31 17:33user19Statusresolved => feedback
1969-12-31 17:33user19Resolutionfixed => reopened
1969-12-31 17:33user19Note Added: 0001588
1969-12-31 17:33user19Statusfeedback => resolved
1969-12-31 17:33user19Resolutionreopened => fixed
2020-03-05 02:19guestNew Issue
2020-03-06 08:09gstecherFile Deleted: cocci wgs lt 1N noX 50mis 2 rename .meg
2022-03-08 07:05guestNote Added: 0004874
2023-04-14 19:10guestNote Added: 0006909

Notes
(0001588)
user19   
1969-12-31 17:33   
It turns out that the TTokenizer's parser can only handle lines of a specific length. If they are too long it throws this error. This is something we should take care of in refactoring. At this point though I said that we read FASTA files natively in M5 so this specific bug is "fixed".
(0004874)
guest   
2022-03-08 07:05   
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(0006909)
guest   
2023-04-14 19:10   
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