MantisBT - MEGA |
| View Issue Details |
|
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0001828 | MEGA | Calculation Error | public | 2020-03-08 10:54 | 2020-03-09 07:26 |
|
| Reporter | guest | |
| Assigned To | gstecher | |
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | resolved | Resolution | no change required | |
| Platform | PC | OS | Windows | OS Version | 10 |
| Product Version | MEGA 11 (Graphical Interface version) | |
| Target Version | | Fixed in Version | | |
| First Name | Son |
| Last Name | Hoang Kim |
| Email | Hoangkimsonbio@gmail.com |
| Confirm Email | Hoangkimsonbio@gmail.com |
|
| Summary | 0001828: treating missing data and gaps in multigene phylogenetics |
| Description | Report bugs or other issues regarding the MEGA software
I got a trouble to solve treating missing data/ gaps in multigene phylogenetic tree with Neighbor-joining tree. My data can use Maximum likelihood tree and Maximum parsimony tree test with only "use all sites" option, but I do not know which method MEGA program used to treat missing data and gaps. I only see the infomation about "Pairwise-Deletion" and "Complete-Deletion", not "use all sites" option. How is it different to other programs like RAxML and MrBayes? Thank you. |
| Steps To Reproduce | |
| Additional Information | I also tested another published data from a paper "A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes". and met similar problems. |
| Tags | No tags attached. |
| Relationships | |
| Attached Files |  5 genes SSU LSU TEF RPB1 RPB2 2.fasta (388,514) 2020-03-08 10:54
https://megasoftware.net/mantis_bt/ |
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| Issue History |
| Date Modified | Username | Field | Change |
| 1969-12-31 17:33 | user19 | Note Added: 0001610 | |
| 1969-12-31 17:33 | user19 | Status | new => assigned |
| 1969-12-31 17:33 | user19 | Assigned To | => user19 |
| 1969-12-31 17:33 | user19 | Note Added: 0001684 | |
| 1969-12-31 17:33 | user19 | Note Added: 0001685 | |
| 1969-12-31 17:33 | user19 | Note Added: 0001686 | |
| 1969-12-31 17:33 | user19 | Note Edited: 0001686 | |
| 1969-12-31 17:33 | user19 | Status | assigned => closed |
| 1969-12-31 17:33 | user19 | Resolution | open => fixed |
| 2020-03-08 10:54 | guest | New Issue | |
| 2020-03-08 10:54 | guest | File Added: 5 genes SSU LSU TEF RPB1 RPB2 2.fasta | |
| 2020-03-09 07:25 | gstecher | Note Deleted: 0001610 | |
| 2020-03-09 07:25 | gstecher | Note Deleted: 0001684 | |
| 2020-03-09 07:25 | gstecher | Note Deleted: 0001685 | |
| 2020-03-09 07:26 | gstecher | Note Deleted: 0001686 | |
| 2020-03-09 07:26 | gstecher | Note Added: 0004418 | |
| 2020-03-09 07:26 | gstecher | Status | new => resolved |
| 2020-03-09 07:26 | gstecher | Resolution | open => no change required |
| 2020-03-09 07:26 | gstecher | Assigned To | => gstecher |