0001846: Issue with building tree for proteins containing selenocysteine residues

MantisBT - MEGA
View Issue Details

ID	Project	Category	View Status	Date Submitted	Last Update
0001846	MEGA	[All Projects] Feedback	public	2020-03-15 17:14	2020-03-23 13:33

Reporter	guest
Assigned To	gstecher
Priority	normal	Severity	minor	Reproducibility	have not tried
Status	resolved	Resolution	won't fix
Platform	PC	OS	Linux	OS Version	other
Product Version	MEGA-CC 11 (command line version)
Target Version		Fixed in Version
First Name	Pok Man
Last Name	Leung
Email	pok.leung@monash.edu
Confirm Email	pok.leung@monash.edu

Summary	0001846: Issue with building tree for proteins containing selenocysteine residues
Description	Hi MEGA team, I am using MEGAX to building a phylogenetic tree for the protein arsenate reductase, some of which contain the unusual amino acid selenocysteine (symbol U). MEGAX seems to be unable to recognize selenocysteine residues and fails to build the tree. The error is as follows: Error: Unable to read your file, error at line 22354 details: Invalid Amino found. Expecting an amino acid, but found 'U'. Is there any way MEGAX be able to work on these proteins? Thanks, Bob
Steps To Reproduce
Additional Information
Tags	No tags attached.
Relationships
Attached Files

Issue History
Date Modified	Username	Field	Change
1969-12-31 17:33	user19	Status	new => assigned
1969-12-31 17:33	user19	Assigned To	=> agasky
1969-12-31 17:33	agasky	Status	assigned => closed
1969-12-31 17:33	agasky	Resolution	open => fixed
2020-03-15 17:14	guest	New Issue
2020-03-23 13:33	gstecher	Note Added: 0004432
2020-03-23 13:33	gstecher	Status	new => resolved
2020-03-23 13:33	gstecher	Resolution	open => won't fix
2020-03-23 13:33	gstecher	Assigned To	=> gstecher

Notes