MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0001901MEGAWeb Browserpublic2020-04-09 08:402023-04-14 19:12
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformMacOSOS XOS Versionother
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameKurt
Last NameWollenberg
Emailkurt.wollenberg@nih.gov
Confirm Emailkurt.wollenberg@nih.gov
Summary0001901: BLAST search bug
DescriptionI am finding that if I change the number of sequences returned in a BLAST search it causes strange behavior, typically some aspect of the BLAST search window freezes. This includes freezing the ability to work with any other field or link on the page or, if the "run BLAST search" button/link works the BLAST search window does not update (Time since submission stays at 0:00:00). Also noticing my hard drive/fan working like a demon while this odd behavior is happening. This bug popped up in a webinar being presented for researchers at the NIH. Very embarrassing!
Steps To ReproduceOpen a BLAST search browser window
Input a sequence ID (NM_000575 used for demo)
Change number of sequences returned from 100 to 250
If possible, click on "BLAST" button to run the search

Search should run to completion in 0000107:0000020 seconds (standalone web browser BLAST search result)
Additional Information
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Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user19Note Added: 0001659
1969-12-31 17:33user19Note Added: 0001664
1969-12-31 17:33user19Statusnew => assigned
1969-12-31 17:33user19Assigned To => user19
1969-12-31 17:33user19Note Added: 0001665
1969-12-31 17:33user19Statusassigned => resolved
1969-12-31 17:33user19Resolutionopen => fixed
2020-04-09 08:40guestNew Issue
2022-03-08 06:57guestNote Added: 0004844
2023-04-14 19:12guestNote Added: 0006930

Notes
(0001659)
user19   
1969-12-31 17:33   
Emailed the user asking for the data file and the parameters he used. Looks like at this point he ran a single test(guessing on that one), which was Best DNA/Protein Models (ML). Then when he closed MEGA it crashed.
(0001664)
user19   
1969-12-31 17:33   
The user emailed me back saying the tests ran just fine and the problem only occurred when he attempted to close MEGA. The problem was in the ClearData routine where we are trying to free FOtuInfos[i].Data. I checked and it is set to nil when it is created, so there should be no problem with this (assuming Data is a simple memory allocation). At this point though it doesn't matter since we are closing MEGA anyway the memory will be dealocated automatically. I just put a try finally which does nothing to hide the error for now.
(0001665)
user19   
1969-12-31 17:33   
look at earlier notes.
(0004844)
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