MantisBT - MEGA
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0000206MEGA[All Projects] Feedbackpublic2016-07-02 11:092016-07-25 10:44
guest 
gstecher 
normalminorhave not tried
resolvedno change required 
 
 
Beatriz
Montero
b.monteag@hotmail.es
b.monteag@hotmail.es
0000206: Help with SSr file to UPGMA
Good Afternoon,

I hope you could help me. I am a Msc Plant Breeding student, and i am doing my final Tesis.
I have to do an UPGMA with the DARwin program, and i have an excell file with SSr with my plant varieties, this way:
 
            SSr 1 SSr2
Plant 123 133
  1 132 133

So, I supose i have to transform my file to a matrix but i dont know exactly if in an binary one or in a Nei & Li (Dice).
Thank you !!!
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Issue History
2016-07-02 11:09guestNew Issue
2016-07-25 10:44gstecherNote Added: 0003683
2016-07-25 10:44gstecherStatusnew => resolved
2016-07-25 10:44gstecherResolutionopen => no change required
2016-07-25 10:44gstecherAssigned To => gstecher

Notes
(0003683)
gstecher   
2016-07-25 10:44   
Hi Beatriz,

I am writing in response to the question you recently posted to the MEGA bug tracker. In order to work with MEGA to generate a UPGMA tree, your data will need to be in either a multiple sequence alignment file or a MEGA formatted distance matrix. You can see examples of the file formats by looking at the example files that come with MEGA.

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Best regards,