MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0002305MEGAMain Formpublic2020-10-21 08:132023-04-14 18:55
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionreopened 
PlatformPCOSLinuxOS VersionRedHat
Product VersionMEGA-CC 11 (command line version) 
Target VersionFixed in Version 
First NameLeocadio
Last NameBlanco-Bercial
Emailleocadio@bios.edu
Confirm Emailleocadio@bios.edu
Summary0002305: mao not found
DescriptionHello MEGA team

I am giving a shot to your MEGA-CC in RHEL7. I am trying to run my command:

megacc –a model.mao -f Fasta –d short9.file.fasta –o short9.file.avedist.txt

But is giving me the error:

[leocadio@bioszoopsrv phylogenetic]$ megacc –a model.mao -f Fasta –d short9.file.fasta –o short9.file.avedist.txt MEGA-CC has logged the following error:
  When = 10/21/2020 12:05:25 PM
  Data file = When
  AnalysisFile =
  Parameter = –a
  Parameter = ./model.mao
  Parameter = -f
  Parameter = Fasta
  Parameter = –d
  Parameter = short9.file.fasta
  Parameter = –o
  Parameter = short9.file.avedist.txt
  Message = The analysis (MAO) file you specified does not exist. Please check your spelling and try again.

  Please see the summary file for warnings/messages
  Please validate all your inputs and try again. If you think this is a
  bug, please report it at http://www.megasoftware.net [^]

Steps To Reproducejust put

megacc –a model.mao -f Fasta –d short9.file.fasta –o short9.file.avedist.txt

on a folder in RHEL with model.mao, and the alignment in fasta.
Additional InformationI tried changing names, giving them the full address, specifying that it is in the same folder (./), running it with sudo... Not sure what is going on.

I see model.mao there, as well as the infile...
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Issue History
Date ModifiedUsernameFieldChange
2020-10-21 08:13guestNew Issue
2022-03-08 08:54guestNote Added: 0005127
2022-03-16 11:09gstecherStatusnew => closed
2022-04-08 05:54guestNote Added: 0005575
2022-04-08 05:54guestStatusclosed => feedback
2022-04-08 05:54guestResolutionopen => reopened
2022-04-08 05:54guestNote Edited: 0005575bug_revision_view_page.php?bugnote_id=5575#r14
2023-04-14 18:55guestNote Added: 0006706
2023-04-14 18:55guestStatusfeedback => new

Notes
(0005127)
guest   
2022-03-08 08:54   
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(0005575)
guest   
2022-04-08 05:54   
Also having this issue, my MAO file is present but not detected by megacc, whether I used relative or absolute path
(0006706)
guest   
2023-04-14 18:55   
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