MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0002432MEGA[All Projects] Feedbackpublic2020-12-14 04:442020-12-14 11:13
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product VersionMEGA-CC 11 (command line version) 
Target VersionFixed in Version 
First NameElsa
Last NameBonnafe
Emailelsa.bonnafe@univ-jfc.fr
Confirm Emailelsa.bonnafe@univ-jfc.fr
Summary0002432: issue with infer_ML .mao file
DescriptionI tried to generate a "construct/test ML tree" with the following command line :
megacc -d infer_ML_proteinvitesfourmis.mao -a AlignementcDNAFourmisMegaPMuscle.fasta -g outgroup.txt -o ML_tree_cDNAFourmisK2G
error message :
Message = Unable to read version of MEGA Analysis Options (.mao) file
 
Message = Could not find the entry [ProcessTypes] in the MEGA Analysis Options (.mao) file provided


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Date ModifiedUsernameFieldChange
2020-12-14 04:44guestNew Issue
2020-12-14 11:13gstecherNote Added: 0004532
2020-12-14 11:13gstecherStatusnew => resolved
2020-12-14 11:13gstecherResolutionopen => no change required
2020-12-14 11:13gstecherAssigned To => gstecher

Notes
(0004532)
gstecher   
2020-12-14 11:13   
Hi Elsa,
I am writing in response to your question regarding the MEGA-CC software. It looks like you have a couple of command line parameters switched. You wrote that you call megacc like:
    megacc -d infer_ML_proteinvitesfourmis.mao -a AlignementcDNAFourmisMegaPMuscle.fasta -g outgroup.txt -o ML_tree_cDNAFourmisK2G
but it should be called like:
    megacc -a infer_ML_proteinvitesfourmis.mao -d AlignementcDNAFourmisMegaPMuscle.fasta -g outgroup.txt -o ML_tree_cDNAFourmisK2G

Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu