MantisBT - MEGA
View Issue Details
IDProjectCategoryView StatusDate SubmittedLast Update
0002715MEGASequence Data Explorerpublic2021-04-07 08:032021-04-08 07:52
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionfixed 
PlatformPCOSWindowsOS Version10
Product Version 
Target VersionFixed in Version 
First NameRuben
Last NameSchols
Emailruben.schols@kuleuven.be
Confirm Emailruben.schols@kuleuven.be
Summary0002715: issue with translation code selection
DescriptionI have Mega X (version 10.1.7) and the software won't let me select from all translation codes available. Just to name one example, we work mainly on trematode parasites which have their own mt translation table. Sadly, I am unable to select this as there are only four options to select from. Previous versions of Mega did not have this issue. Therefore, I used to use Mega 7 but I had to switch to Mega X since I could not reinstal Mega 7 for some strange reason.
When I try to add a genetic code to the program and I press the 'add' button nothing happens...
It is really frustrating and something that has been bugging me for some time.
Steps To ReproduceVery simple. Just go to file and select the fast file you want to work with. Then nucleotide sequence. Say that it is coding. And then you have to select a genetic code.
Additional Information
TagsNo tags attached.
Relationships
Attached Files
Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user19Note Added: 0002120
1969-12-31 17:33user19Statusnew => resolved
1969-12-31 17:33user19Resolutionopen => fixed
1969-12-31 17:33user19Assigned To => user19
2021-04-07 08:03guestNew Issue
2021-04-08 07:33gstecherFile Deleted: screenshots.zip
2021-04-08 07:52gstecherNote Added: 0004570
2021-04-08 07:52gstecherStatusnew => resolved
2021-04-08 07:52gstecherResolutionopen => fixed
2021-04-08 07:52gstecherAssigned To => gstecher

Notes
(0002120)
user19   
1969-12-31 17:33   
Dear Justus,

I’m responding to a bug report you left recently about not the cutoff values not being applied properly when you generated a bootstrap tree. The problem you ran into isn’t really a bug, it’s more of a feature which isn’t clearly explained.

If you look at the cutoff value in the tree options, it will indeed say 50%. That is the cutoff value which will be enforced when you turn on the ‘Condensed tree’ option. I can see from your screenshot that the ‘condenced tree’ option is not turned on. Here’s a screenshot of a tree before and after I have turned on the condenced tree option. I will see if we can’t hide this tab from the Tree Options until a user is in condensed mode. Maybe that will make it less confusing.

 
Fig 1. A tree created


 
Fig 2. With condensed tree option activated

Daniel Peterson
(0004570)
gstecher   
2021-04-08 07:52   
Hi Ruben,

 I am writing in response the bug report you recently filed regarding the MEGA software. Thanks for the feedback. The bug you encountered is fixed in the current release of MEGAX which can be downloaded from:
    https://www.megasoftware.net/ [^]


Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu