MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0002736MEGA[All Projects] Feedbackpublic2021-04-14 05:042021-04-14 10:53
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionwon't fix 
PlatformOSOS Version
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameAnne
Last NameGrünberg
EmailGruenberg.Anne@baua.bund.de
Confirm EmailGruenberg.Anne@baua.bund.de
Summary0002736: Proxy connection
DescriptionI want to use MEGA-X for Windows. With MEGA 5.05 I use the function to BLAST the sequences. But with MEGA-X there is no connection to the internet possible.
Is it possible, to change settings so I can use MEGA-X within our company-proxy?

Best regards,
Anne Grünberg
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Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user614Note Added: 0002141
1969-12-31 17:33user614Assigned To => user614
1969-12-31 17:33user614Statusnew => acknowledged
1969-12-31 17:33user614Note Added: 0002159
1969-12-31 17:33user614Statusacknowledged => closed
1969-12-31 17:33user614Resolutionopen => no change required
2021-04-14 05:04guestNew Issue
2021-04-14 10:53gstecherNote Added: 0004571
2021-04-14 10:53gstecherStatusnew => resolved
2021-04-14 10:53gstecherResolutionopen => won't fix
2021-04-14 10:53gstecherAssigned To => gstecher

Notes
(0002141)
user614   
1969-12-31 17:33   
Hello Toranj,

I am responding to your question regarding inference of ancestral sequences and molecular clock analysis using MEGA. The trees required should be in the Newick format. You can generate a tree from your sequence data in MEGA using the available options (under Phylogeny) and then export it in Newick format. Unfortunately we do not yet have a step by step tutorial for using the ancestral sequence inference and molecular clock test features. Below are links to a couple of resources that may be helpful:

http://mep.asu.edu/ [^]
http://www.sinauer.com/detail.php?id=3105 [^]
 
Also, your favorite internet search engine should be able to find information regarding these analyses.

Best regards,

Glen Stecher
(0002159)
user614   
1969-12-31 17:33   
hello dear glen
thanks for your kindness.
regards
(0004571)
gstecher   
2021-04-14 10:53   
Hi Anne,

I am writing in response to your question regarding the MEGA software. No, it is not possible to change settings for MEGA’s web browser. However, you can do BLAST directly from NCBI using your own web browser at https://blast.ncbi.nlm.nih.gov/Blast.cgi [^]

Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu