MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0002805MEGA[All Projects] Feedbackpublic2021-05-06 22:482021-05-11 13:36
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product Version 
Target VersionFixed in Version 
First NameTuba
Last NameBATOOL
Emailtubasharf@ymail.com
Confirm Emailtubasharf@ymail.com
Summary0002805: Linux compatibility
DescriptionDear sir
This is Tuba sharf Batool. . I wanted to know if mega x has compatibility with supercomputer linux ?

Thankyou
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Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user614Note Added: 0002231
1969-12-31 17:33user614Statusnew => acknowledged
1969-12-31 17:33user614Note Added: 0002232
1969-12-31 17:33user614Statusacknowledged => closed
1969-12-31 17:33user614Resolutionopen => no change required
2021-05-06 22:48guestNew Issue
2021-05-11 13:36gstecherNote Added: 0004582
2021-05-11 13:36gstecherStatusnew => resolved
2021-05-11 13:36gstecherResolutionopen => no change required
2021-05-11 13:36gstecherAssigned To => gstecher

Notes
(0002231)
user614   
1969-12-31 17:33   
Hello Rebecca,

I am responding to your question regarding gamma parameter values for ML inference in MEGA. When using a GTR model for ML inference, a gamma option can be set in the ‘Analysis Preferences’ dialog by expanding the drop down list in the ‘Rates Among Sites’ row and selecting either ‘Gamma Distributed(G)’ or ‘Gamma distributed with invariant sites (G+I)’. In either case, MEGA will estimate the value of the gamma shape parameter and you will not be able to specify your own estimate. You can view the value of the estimated gamma shape parameter by clicking the ‘Caption’ button within the Tree Explorer.

Best regards,

Glen Stecher
(0002232)
user614   
1969-12-31 17:33   
No problem here, so no change required.
(0004582)
gstecher   
2021-05-11 13:36   
Hi Tuba,

I am writing in response to your question regarding the MEGA software. MEGA can be run on Linux computers but it is not optimized for distributed or cluster computing. I am guessing that is what you mean by Supercomputer?.

Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu