MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0002841MEGA[All Projects] Feedbackpublic2021-05-25 05:552021-05-27 07:51
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameSumanta
Last NameDas
Emailsumantad1991@gmail.com
Confirm Emailsumantad1991@gmail.com
Summary0002841: Mega X
DescriptionHow do I add superscript in text format phylogeny tree and also italics mainly genus and species not strain number or accession
Steps To Reproduce
Additional Information
TagsNo tags attached.
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Attached Files
Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user614Note Added: 0002275
1969-12-31 17:33user614Note Added: 0002281
1969-12-31 17:33user614Note Added: 0002282
1969-12-31 17:33user614Note Added: 0002297
1969-12-31 17:33user614Note Added: 0002556
1969-12-31 17:33user614Statusnew => closed
1969-12-31 17:33user614Resolutionopen => won't fix
2021-05-25 05:55guestNew Issue
2021-05-27 07:51gstecherNote Added: 0004601
2021-05-27 07:51gstecherStatusnew => resolved
2021-05-27 07:51gstecherResolutionopen => no change required
2021-05-27 07:51gstecherAssigned To => gstecher

Notes
(0002275)
user614   
1969-12-31 17:33   
Hello James,

I am responding to the bug report you submitted regarding the failed install of MEGA on your RedHat machine. Would it be possible for you to run the MEGA5_Setup_rpm_v2.sh install script again and redirect the output to a text file ( ./MEGA5_Setup_rpm_v2.sh > installationOutput.txt) and email it to me. This might give us some insight into the problem. Also, if there was a random problem with downloading the archive, trying again might resolve the issue.

Best regards,

Glen Stecher
(0002281)
user614   
1969-12-31 17:33   
[root@noah Desktop]# sh MEGA5_Setup_rpm.sh > installationOutput.txt

[root@noah Desktop]# sh MEGA5_Setup_rpm.sh
About to add EPEL repo to install wine. If you already have wine installed, you may skip this step.
Add EPEL repository [y]y
Which version of RedHat do you have (you can run 'cat /proc/version' to find out) Type 4, 5 or 6? [6]4
Retrieving http://download.fedora.redhat.com/pub/epel/5/i386/epel-release-5-4.noarch.rpm [^]
Preparing... ########################################### [100%]
        package epel-release-5-4.noarch is already installed
About to add megasoftware repository necessary in order to install MEGA
Add megasoftware repository (mandatory) [y]
Creating repository entry in /etc/yum.repos.d/ as megasoftware.repo.
megasoftware repository added successfully
Now installing mega via 'yum install mega'
Loaded plugins: rhnplugin, security
Repository 'mega' is missing name in configuration, using id
epel | 3.7 kB 00:00
mega | 951 B 00:00
jpackage-generic-updates | 2.3 kB 00:00
jpackage-generic | 2.3 kB 00:00
rhel-x86_64-client-5 | 1.4 kB 00:00
Setting up Install Process
Parsing package install arguments
Resolving Dependencies
--> Running transaction check
---> Package mega.noarch 0:5.05-5110426 set to be updated
--> Finished Dependency Resolution

Dependencies Resolved

===============================================================================================================
 Package Arch Version Repository Size
===============================================================================================================
Installing:
 mega noarch 5.05-5110426 mega 1.1 M

Transaction Summary
===============================================================================================================
Install 1 Package(s)
Update 0 Package(s)
Remove 0 Package(s)

Total download size: 1.1 M
Is this ok [y/N]: yDownloading Packages:
mega-5.05-5110426.noarch.rpm | 1.1 MB 00:00
Running rpm_check_debug
Running Transaction Test
Finished Transaction Test
Transaction Test Succeeded
Running Transaction
  Installing : mega [1/1]
Error unpacking rpm package mega-5.05-5110426.noarch
error: unpacking of archive failed on file /usr/local/lib/MEGA/Installers/MozillaFiles/components/dom_html.xpt;4ddd4a8f: cpio: read

Installed: mega.noarch 0:5.05-5110426
Complete!
[root@noah Desktop]# mega
Installing Fonts for improved viewing
/bin/cp: omitting directory `/bin'
/bin/cp: omitting directory `/boot'
/bin/cp: omitting directory `/dev'
/bin/cp: omitting directory `/etc'
/bin/cp: omitting directory `/home'
/bin/cp: omitting directory `/lib'
/bin/cp: omitting directory `/lib64'
/bin/cp: omitting directory `/lost+found'
/bin/cp: omitting directory `/media'
/bin/cp: omitting directory `/misc'
/bin/cp: omitting directory `/mnt'
/bin/cp: omitting directory `/net'
/bin/cp: omitting directory `/opt'
/bin/cp: omitting directory `/opt2'
/bin/cp: omitting directory `/opt3'
/bin/cp: omitting directory `/proc'
/bin/cp: omitting directory `/root'
/bin/cp: omitting directory `/sbin'
/bin/cp: omitting directory `/selinux'
/bin/cp: omitting directory `/srv'
/bin/cp: omitting directory `/sys'
/bin/cp: omitting directory `/tarDir'
/bin/cp: omitting directory `/testShare'
/bin/cp: omitting directory `/tmp'
/bin/cp: omitting directory `/usr'
/bin/cp: omitting directory `/var'
Executing MEGA ...
MEGA Launched Wed May 25 13:30:22 CDT 2011
wine: cannot find '/usr/local/lib/MEGA/MEGA5.exe'
(0002282)
user614   
1969-12-31 17:33   
Hello Jim,
Thanks for sending me that output. You are correct, somehow our rpm got corrupted. It is fixed now so you should be able to run the install script. Please let me know if the install goes ok.

Best regards,

Glen Stecher
(0002297)
user614   
1969-12-31 17:33   
Hello Jim,
I apologize, we did not completely fix the problem with the repo. I am assured by my colleague that it is working correctly now.

Best regards,

Glen Stecher


glen,

now i am getting this error when i run the install.

thanks, jim


[root@noah Desktop]# sh MEGA5_Setup_rpm.sh
About to add EPEL repo to install wine. If you already have wine installed, you may skip this step.
Add EPEL repository [y]y
Which version of RedHat do you have (you can run 'cat /proc/version' to find out) Type 4, 5 or 6? [6]4
Retrieving http://download.fedora.redhat.com/pub/epel/5/i386/epel-release-5-4.noarch.rpm [^]
Preparing... ########################################### [100%]
        package epel-release-5-4.noarch is already installed
About to add megasoftware repository necessary in order to install MEGA
Add megasoftware repository (mandatory) [y]y
Creating repository entry in /etc/yum.repos.d/ as megasoftware.repo.
megasoftware repository added successfully
Now installing mega via 'yum install mega'
Loaded plugins: rhnplugin, security
Repository 'mega' is missing name in configuration, using id
mega | 951 B 00:00
Setting up Install Process
Parsing package install arguments
Resolving Dependencies
--> Running transaction check
---> Package mega.noarch 0:5.05-5110426 set to be updated
--> Finished Dependency Resolution

Dependencies Resolved

===================================================================================================================================
 Package Arch Version Repository Size
===================================================================================================================================
Installing:
 mega noarch 5.05-5110426 mega 1.1 M

Transaction Summary
===================================================================================================================================
Install 1 Package(s)
Update 0 Package(s)
Remove 0 Package(s)

Total download size: 1.1 M
Is this ok [y/N]: y
Downloading Packages:
mega-5.05-5110426.noarch.rpm | 27 MB 00:03
http://update.megasoftware.net/rpm/mega-5.05-5110426.noarch.rpm: [^] [Errno -1] Package does not match intended download
Trying other mirror.


Error Downloading Packages:
  mega-5.05-5110426.noarch: failure: mega-5.05-5110426.noarch.rpm from mega: [Errno 256] No more mirrors to try.
(0002556)
user614   
1969-12-31 17:33   
We will be dropping support for Linux as of version 5.1
(0004601)
gstecher   
2021-05-27 07:51   
Hi Sumanta,

I am writing in response to your question regarding the MEGA software. The features you describe do not exist in MEGA. You might try using FigTree which can be used for making publication-ready and formatted trees.

Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu