MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000309MEGA[All Projects] Feedbackpublic2016-11-07 11:082016-12-02 07:29
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product VersionMEGA Website 
Target VersionFixed in Version 
First NameNicholas
Last NameOehlberg
EmailNicholas.oehlberg@gmail.com
Confirm EmailNicholas.oehlberg@gmail.com
Summary0000309: Invalid base?
DescriptionTrying to open a file/session with nucleotide data.
The file says "error in line 5: invalid base P"
Other files of the same type have no problem opening in MEGA, they all have P as a base in them.
Only 2 of the 8 files (varying sample sizes) have this problem.
Steps To Reproduce
Additional Information
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Issue History
Date ModifiedUsernameFieldChange
2016-11-07 11:08guestNew Issue
2016-11-28 14:27gstecherAssigned To => gstecher
2016-11-28 14:27gstecherStatusnew => assigned
2016-11-28 14:27gstecherNote Added: 0003715
2016-12-02 07:29gstecherNote Added: 0003723
2016-12-02 07:29gstecherStatusassigned => resolved
2016-12-02 07:29gstecherResolutionopen => no change required

Notes
(0000224)
gstecher   
1969-12-31 17:33   
Reply sent.
(0000265)
gstecher   
1969-12-31 17:33   
This should be fixed with Koichiro\'s update.
(0003715)
gstecher   
2016-11-28 14:27   
Hi Nicholas,

I am writing in response to the bug report you recently submitted regarding the MEGA software. Could you send me one of the files that leads to the error message in MEGA so that I could have a look?

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu
(0003723)
gstecher   
2016-12-02 07:29   
There's no need. When I had written the code to sort my data files I swapped the names of two files without realizing it so the files were mislabeled. User error. After realizing that, and using the right datafile it worked.

Thanks for responding, Glen.



On Mon, Nov 28, 2016 at 2:27 PM, glen stecher <tuf81013@temple.edu> wrote:

    Hi Nicholas,

    I am writing in response to the bug report you recently submitted regarding the MEGA software. Could you send me one of the files that leads to the error message in MEGA so that I could have a look?

    --
    Best regards,

    Glen Stecher
    Institute for Genomics and Evolutionary Medicine
    igem.temple.edu