|
|
Hi Themis,
I am writing in response to the question you recently posted to the MEGA bug tracker regarding how to set the genetic code table for the z-test of selection analysis. Thanks for the feedback. We will fix the bug you found soon. In the meantime, I think you can work around the problem as follows:
Add a couple of lines for the genetic code table to the .mao file as in the attached example.
If you need a different code table from the one in the example then:
open megaproto
select coding data
select some other analysis (like Phylogeny->Construct/Test Maximum Likelihood Tree...)
set the Substitution Type to Amino Acid
select the desired genetic code table
save that mao file
open that mao file in a text editor and copy the two code table lines from that file
paste the two code table lines into your .mao file for the z-test
--
Best regards,
Glen Stecher |
|