MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000313MEGATree Explorerpublic2016-11-16 08:252016-11-28 14:25
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionfixed 
PlatformMacOSOS XOS Version10.11
Product Version 
Target VersionFixed in Version 
First NameYI
Last NameTAN
Emailyiyity@gmail.com
Confirm Emailyiyity@gmail.com
Summary0000313: when i try to build bootstrap ML tree
DescriptionReport bugs or other issues regarding the MEGA software
Steps To Reproduce
Additional Information
TagsNo tags attached.
Relationships
Attached Filestxt bugreport.txt (14,441) 2016-11-16 08:25
https://megasoftware.net/mantis_bt/
Issue History
Date ModifiedUsernameFieldChange
2016-11-16 08:25guestNew Issue
2016-11-16 08:25guestFile Added: bugreport.txt
2016-11-22 07:26gstecherFile Deleted: pgiA.meg
2016-11-28 14:25gstecherNote Added: 0003714
2016-11-28 14:25gstecherStatusnew => resolved
2016-11-28 14:25gstecherResolutionopen => fixed
2016-11-28 14:25gstecherAssigned To => gstecher

Notes
(0000203)
gstecher   
1969-12-31 17:33   
I was able to validate the floating point exception bug.
(0000204)
gstecher   
1969-12-31 17:33   
Floating point bug occurs in ProcessTestCmds at

TajimaD := TajimaD /StdErrD;

and at the time of the exception both TajimaD and StdErrD are equal to 0.
(0000211)
gstecher   
1969-12-31 17:33   
The user\'s data set contained no variable sites at the amino acid level and therefore Tajima D is 0. I\'ll update the error handling code to catch this exception.
(0000215)
gstecher   
1969-12-31 17:33   
Made the following changes to handle the error:

if TajimaD > 0.000001 then
      begin
        TajimaD := TajimaD /StdErrD;
        OutStrList.Add(Format(\'D = %7.6f\', [TajimaD]));
      end;

Therefore if TajimaD is 0 then we simply do not display D in the output.
(0003714)
gstecher   
2016-11-28 14:25   
Hi Yi,

I am writing in response to the bug report you recently submitted regarding the MEGA software. Thanks for the feedback. The bug you encountered should be fixed in the newest release of MEGA (version 7) which can be downloaded from www.megasoftware.net.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu