MantisBT - MEGA
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0000322MEGA[All Projects] Feedbackpublic2016-11-29 16:142016-12-01 13:09
guest 
gstecher 
normalminorhave not tried
resolvedno change required 
MEGA 11 (Graphical Interface version) 
 
Mark
Maienschein-Cline
mmaiensc@uic.edu
mmaiensc@uic.edu
0000322: Preparing .mao files for command line
I am a first-time user of MEGA, and I've been trying out the GUI version on Mac OSX, but I would like to be able to run batch jobs on our Linux compute cluster once I've figured out the settings I like in the GUI version. However, I've having trouble seeing how to export a .mao file from the Mac GUI: I don't see a separate program for megaproto on Mac, as the documentation suggests, and I couldn't find an export .mao option in any of the GUI menus. Can you please direct me?
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Issue History
2016-11-29 16:14guestNew Issue
2016-12-01 13:09gstecherRelationship deletedhas duplicate 0000319
2016-12-01 13:09gstecherNote Added: 0003720
2016-12-01 13:09gstecherStatusnew => resolved
2016-12-01 13:09gstecherResolutionopen => no change required
2016-12-01 13:09gstecherAssigned To => gstecher

Notes
(0000239)
Nikita Vikhrev   
1969-12-31 17:33   
I have identified the bug, i.e., the standard genetic code is always loaded irrespective of the user\'s selection. When the user use the selection menu, the specified code table is introduced.
(0000285)
Nikita Vikhrev   
1969-12-31 17:33   
Fixed.
(0003720)
gstecher   
2016-12-01 13:09   
Hi Mark,

I am writing in response to your question regarding how to generate mao files for MEGA-CC. To do this, you should download the command-line version of MEGA, which also has a prototyper application packaged with it for generating the mao files.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu