MantisBT - MEGA
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0000353MEGA[All Projects] Feedbackpublic2016-12-25 13:102017-01-18 13:23
guest 
gstecher 
normalminorhave not tried
resolvedno change required 
 
 
Amira
Khattab
amira.khattab@pua.edu.eg
amira.khattab@pua.edu.eg
0000353: an inquiry about constructing similarity index from RAPD genetic analysis
I have an inquiry is that applicable using Megs software to get a similarity matrix or index (By Jaccard algorithm) from a a sequence of DNA bands from gel electropheresis analysis in RAPD to draw a phlyogenetic tree.
Thanks
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Issue History
2016-12-25 13:10guestNew Issue
2017-01-18 13:19gstecherFile Deleted: mx12 alignmentGCG.meg
2017-01-18 13:23gstecherNote Added: 0003734
2017-01-18 13:23gstecherStatusnew => resolved
2017-01-18 13:23gstecherResolutionopen => no change required
2017-01-18 13:23gstecherAssigned To => gstecher

Notes
(0000243)
gstecher   
1969-12-31 17:33   
This is related to bug 0000352
(0000244)
gstecher   
1969-12-31 17:33   
The sequence #MX12NIR_D12-1-seq is longer than the others. Not a bug.
(0003734)
gstecher   
2017-01-18 13:23   
Hi Amira,

I am writing in response to your question regarding the MEGA software. To construct a phylogenetic tree using MEGA, you will need a DNA or protein sequence alignment (applicable for all methods) or a pre-computed distance matrix (only applicable for distance methods).

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu