MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0003619MEGAAlignment Explorerpublic2022-04-21 21:462023-04-14 18:54
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformPCOSLinuxOS Versionother
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameAnushree
Last Namekrishnamurthy
Emailk_anushree@ibab.in
Confirm Emailk_anushree@ibab.in
Summary0003619: MEGA keeps crashing
DescriptionReport bugs or other issues regarding the MEGA software

Everytime I try to open alignment explorer, Mega shuts down.
Steps To Reproduce
Additional Information
TagsNo tags attached.
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Attached Filesxls TemporaryMEGA10.xls (47,104) 1969-12-31 17:33
https://megasoftware.net/mantis_bt/
Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user614Note Added: 0002410
1969-12-31 17:33user614Statusnew => resolved
1969-12-31 17:33user614Resolutionopen => no change required
1969-12-31 17:33user614Assigned To => user614
2022-04-21 21:46guestNew Issue
2023-04-14 18:54guestNote Added: 0006693

Notes
(0002410)
user614   
1969-12-31 17:33   
Hello Jorg,

I am responding to the question you had regarding the way that MEGA reports codon usage. The way that MEGA reports the codon usage is to give the average frequency of each codon (across all taxa) in the column labeled ‘Count’. Also given is the average# of codons across all taxa. You can convert the average frequencies to a percentage by dividing them by the average # of codons if you like. For example, in domain 1 of your data there is an average of 346 codons. If you divide all the frequencies (for domain 1) by this number you will get the frequency of each given codon expressed as a percentage. These will then sum to 1 (or very close due to rounding). Hope this helps!

Best regards,

Glen Stecher
(0006693)
guest   
2023-04-14 18:54   
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