MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0003850MEGAAlignment Explorerpublic2022-08-03 02:152023-04-14 18:49
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformPCOSWindowsOS Version10
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NamePURBITA
Last NameSIKDAR
Emailtitir99kol@gmail.com
Confirm Emailtitir99kol@gmail.com
Summary0003850: Keeps crashing while running alignment
DescriptionI am trying to perform a DNA sequence alignment using a file from my system. The "Progress" window pops up and immediately crashes, shutting down the tool itself. I am trying to do it for 5-6 times now. It's still the same.
Steps To Reproduce
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Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user614New Issue
1969-12-31 17:33user614SummaryMafft presets are not available when aligning amino acid data => Mafft presets are not available when aligning amino acid data or when aligning codons
1969-12-31 17:33user614Description Updated
1969-12-31 17:33user19Note Added: 0002684
1969-12-31 17:33user19Statusnew => resolved
1969-12-31 17:33user19Resolutionopen => fixed
1969-12-31 17:33user19Assigned To => user19
2022-08-03 02:15guestNew Issue
2023-04-14 18:49guestNote Added: 0006633

Notes
(0002684)
user19   
1969-12-31 17:33   
According to the mafft website there doesn't appear to be any specific preset to use for alignment of nucleotides vs. protein data. There are some more specific options such as gap open and gap extend parameters, although there are no clear default values given by MAFFT.

Unless gap parameters are really important it would be best to just leave them out and use the presets.
(0006633)
guest   
2023-04-14 18:49   
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