MantisBT - MEGA
View Issue Details
IDProjectCategoryView StatusDate SubmittedLast Update
0004580MEGAFile Conversionpublic2023-02-20 18:552023-04-14 00:44
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformPCOSWindowsOS Version10
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameShuhei
Last NameAdachi
Emailsadachi@sapmed.ac.jp
Confirm Emailsadachi@sapmed.ac.jp
Summary0004580: Not available of align and analysis
DescriptionReport bugs or other issues regarding the MEGA software

Any fasta files we want to analyse are not available with error. The following message is displayed.

"Oh no! An error has occured: Size range over flow in AlignEditMainForm.SendMoveSizeMassage:Width=65610,Height=40112"
Steps To ReproduceWhen attempting to align or analyssi any fasta file.
The file was analysable until the previous day.
Additional Information
TagsNo tags attached.
Relationships
Attached Fileszip anc.zip (1,141) 1969-12-31 17:33
https://megasoftware.net/mantis_bt/
Issue History
Date ModifiedUsernameFieldChange
1969-12-31 17:33user614Statusnew => assigned
1969-12-31 17:33user614Assigned To => user614
1969-12-31 17:33user614Note Added: 0003198
1969-12-31 17:33user614Note Added: 0003216
1969-12-31 17:33user614Statusassigned => resolved
1969-12-31 17:33user614Resolutionopen => no change required
2023-02-20 18:55guestNew Issue
2023-04-14 00:44guestNote Added: 0006238

Notes
(0003198)
user614   
1969-12-31 17:33   
Hello Rodrigo,

I am writing in response to the bug report you recently submitted regarding an error when running ancestral sequence inference using MEGA. It looks like the error is caused because the required Newick file for this analysis is missing. The path to this file should be given in the command string as ‘–t theTreeFile.nwk’. We will update MEGA-CC so that an informative error message is given. Thanks for the feedback.

Best regards,

Glen Stecher
(0003216)
user614   
1969-12-31 17:33   
Hi, Glen,

Thank you!

Best regards,


Prof. Dr. Rodrigo Barban Zucoloto
Universidade Federal da Bahia
Instituto de Biologia
Departamento de Biologia Geral
Laboratório de Genética de Populações e Evolução Molecular
Tel.: (+55)071-3283-6539
Cel.: (+55)071-8707-1628 (OI)
Cel.: (+55)071-9374-7429 (TIM)

2013/9/3 Glen Stecher <gstecher@mainex1.asu.edu>
Hi Rodrigo,
 
Yes, it is easily done with MEGA-CC. First, construct the phylogeny using the sequence data and the ML method. This will produce a newick file of the inferred tree. Then you can use it to run ancestral sequence inference.
 
Best regards,
 
Glen Stecher
Application Programmer
Center for Evolutionary Medicine
Phone: 480-965-3880
Web: http://cemi.asu.edu [^]
 
From: Rodrigo Barban Zucoloto [mailto:rbzucoloto@gmail.com]
Sent: Tuesday, September 03, 2013 10:31 AM
To: Glen Stecher
Subject: Re: MEGA bug
 
Hi,
 
I thought that this analysis could be made without the prior statement of a tree. In my case it would be very important that a tree was estimated directly from the data by ML, because I do not have a prior information!
 
Thank you,


Prof. Dr. Rodrigo Barban Zucoloto
Universidade Federal da Bahia
Instituto de Biologia
Departamento de Biologia Geral
Laboratório de Genética de Populações e Evolução Molecular
Tel.: (+55)071-3283-6539
Cel.: (+55)071-8707-1628 (OI)
Cel.: (+55)071-9374-7429 (TIM)
 
2013/9/3 Glen Stecher <gstecher@mainex1.asu.edu>
Hello Rodrigo,
 
I am writing in response to the bug report you recently submitted regarding an error when running ancestral sequence inference using MEGA. It looks like the error is caused because the required Newick file for this analysis is missing. The path to this file should be given in the command string as ‘–t theTreeFile.nwk’. We will update MEGA-CC so that an informative error message is given. Thanks for the feedback.
 
Best regards,
 
Glen Stecher
Application Programmer
Center for Evolutionary Medicine
Web: http://cemi.asu.edu [^]
(0006238)
guest   
2023-04-14 00:44   
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