MantisBT - MEGA
Build#: 7170509-x86_64
0% Organizing sequence information a
MEGA-CC has logged the following warning:
When = 26-5-17 16:05:10
Data file = 660_orthos_verified_concatenated.fasta
AnalysisFile = ./reltime_ml_coding_26May2017.mao
Tree File = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk
Parameter = -t
Parameter = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk
Parameter = -g
Parameter = groups.txt
Parameter = -c
Parameter = 660_orthos_calibration_time.txt
Parameter = -o
Parameter = out.txt
Message = No Code table was specified, assuming the Genetic Code Table is 'Standard'
Please see the summary file for warnings/messages
Please validate all your inputs and try again. If you think this is a
bug, please report it at http://www.megasoftware.net [^]
0% 26-5-17 16:05:10
Using the following analysis options:
No. of Taxa 47
No. of Groups 1
Analysis Estimate Divergence Times (ML)
Tree to Use Use tree from file
Clock Type Local clocks
Variance Estimation Method Analytical method
No. of Bootstrap Replications Not Applicable
Statistical Method Maximum Likelihood
Substitutions Type Nucleotide
Model/Method General Time Reversible model
Rates among Sites Gamma Distributed (G)
No of Discrete Gamma Categories 5
Gaps/Missing Data Treatment Use all sites
Site Coverage Cutoff (%) Not Applicable
Select Codon Positions 1st, 2nd, 3rd,
Branch Swap Filter None
Number of Threads 8
Genetic Code Table Not Applicable
Genetic Code Not Applicable
Has Time Limit False
Maximum Execution Time -1
datatype snNucleotide
containsCodingNuc True
MissingBaseSymbol ?
IdenticalBaseSymbol .
GapSymbol -
Start time: 26-5-17 16:05:10
Executing analysis:
0% Setting model parameters MEGA-CC has logged the following error:
When = 26-5-17 16:05:22
Data file = 660_orthos_verified_concatenated.fasta
AnalysisFile = ./reltime_ml_coding_26May2017.mao
Tree File = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk
Parameter = -t
Parameter = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk
Parameter = -g
Parameter = groups.txt
Parameter = -c
Parameter = 660_orthos_calibration_time.txt
Parameter = -o
Parameter = out.txt
Message = Failure in Reltime analysis
Please see the summary file for warnings/messages
Please validate all your inputs and try again. If you think this is a
bug, please report it at http://www.megasoftware.net [^]
Error_MEGACC.txt (3,132) 2017-05-26 13:20https://megasoftware.net/mantis_bt/