MantisBT - MEGA
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0000493MEGA[All Projects] Feedbackpublic2017-07-07 08:452024-03-05 10:28
guest 
gstecher 
normalminorhave not tried
resolvedwon't fix 
MEGA-CC 11 (command line version) 
 
liwei
Liu
wanwan1226@qq.com
wanwan1226@qq.com
0000493: protein align (Some sequences are too divergent to be aligned)
Hi, I want to align multiple protein sequences with megacc. I runned './megacc -a ~/clustal_align_protein.mao -d ./input.fa -f Fasta -o outfile ', and got an error message 'Error occured curing ClustalW alignment: Some sequences are too divergent to be aligned.'.

How can I ignore this error message and get a alignment outfile? In mega-GUI version, there is a dialog box that I can choose "ignore" button. But I don't know how to do with mega-cc. Hope for your reply. Thank you !
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Issue History
2017-07-07 08:45guestNew Issue
2017-07-10 12:13gstecherFile Deleted: AA Ae data.meg
2017-07-11 09:02gstecherNote Added: 0003827
2017-07-11 09:02gstecherStatusnew => resolved
2017-07-11 09:02gstecherResolutionopen => won't fix
2017-07-11 09:02gstecherAssigned To => gstecher
2024-02-16 00:59guestTag Attached: >TP6 ATGCGGTGGAAAACTTCCTCCAACCACACCCAAACCCTCGCTGCTCACTGTCTCTCCCGCTTCGAAGAAGCCGTCCCCGTCCTCGAACGCGCCAT
2024-03-05 10:28guestTag Detached: >TP6 ATGCGGTGGAAAACTTCCTCCAACCACACCCAAACCCTCGCTGCTCACTGTCTCTCCCGCTTCGAAGAAGCCGTCCCCGTCCTCGAACGCGCCAT

Notes
(0003827)
gstecher   
2017-07-11 09:02   
Hi Liwei,

I am writing in response to your question regarding the MEGA software. In MEGA-CC there is not a way to ignore the error that alignment by ClustalW is showing. This is because MEGA-CC is not an interactive application like MEGA-GUI.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu