MantisBT - MEGA
View Issue Details
IDProjectCategoryView StatusDate SubmittedLast Update
0000513MEGAText Editorpublic2017-08-02 13:272017-09-19 07:24
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformMacOSOS XOS Version10.11
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameQing
Last NameLiu
Emailqingpol@uci.edu
Confirm Emailqingpol@uci.edu
Summary0000513: Large input file size
DescriptionDear MEGA7,
I want to use mega7 to reconstruct a NJ tree of my subject genomes. I have 476 sequences, with each sequence having 930,000 bases in length. So the total size of my input file is about 450 Mb.

You know, when I used the MEGA-GUI version, I got the error information "The file you are trying to open is too large for MEGAs text editor to handle."

So I tried the CC-version instead, but it said "Error: Line Too Long (in line 4)".

Thus, except for reducing my file size, how can I do now?
Steps To Reproduce
Additional Information
TagsNo tags attached.
Relationships
has duplicate 0000512resolved gstecher Large input file size 
Attached Files
Issue History
Date ModifiedUsernameFieldChange
2017-08-02 13:27guestNew Issue
2017-08-16 08:05gstecherNote Deleted: 0000393
2017-08-16 08:05gstecherNote Deleted: 0000442
2017-08-16 08:05gstecherNote Deleted: 0000423
2017-08-16 08:08gstecherAssigned To => gstecher
2017-08-16 08:08gstecherStatusnew => assigned
2017-08-16 08:08gstecherNote Added: 0003843
2017-08-16 08:08gstecherRelationship addedhas duplicate 0000512
2017-09-19 07:24gstecherNote Added: 0003848
2017-09-19 07:24gstecherStatusassigned => resolved
2017-09-19 07:24gstecherResolutionopen => no change required

Notes
(0003843)
gstecher   
2017-08-16 08:08   
Hi Qing,

I am writing in response to your question regarding the MEGA software. What format is you alignment file in? With most formats, you add line endings (typically every 80 characters) to your sequences so that they are distributed over multiple lines and lines are not very long.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu
(0003848)
gstecher   
2017-09-19 07:24   
no response from user