MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0005272MEGA[All Projects] Feedbackpublic2023-06-25 15:272023-06-27 10:09
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameSilverio
Last NameQuintana
Emailkbqt14@gmail.com
Confirm Emailkbqt14@gmail.com
Summary0005272: Query about Gamma
DescriptionGood afternoon. Using the option to search for the best replacement model, I get Kimura 2 parameters with a gamma value of 0.36. When trying to build the tree by maximum likelihood, it does not let me put values ​​less than 2 in the discrete distribution of gamma. what do i do in this case?
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Date ModifiedUsernameFieldChange
2023-06-25 15:27guestNew Issue
2023-06-27 10:09gstecherNote Added: 0007701
2023-06-27 10:09gstecherStatusnew => resolved
2023-06-27 10:09gstecherResolutionopen => no change required
2023-06-27 10:09gstecherAssigned To => gstecher

Notes
(0007701)
gstecher   
2023-06-27 10:09   
Hi there,

I am writing in response to the question you recently submitted regarding the MEGA software. For the ML analysis you can specify the number of discrete gamma categories to use if using gamma distributed rates. This is different from a gamma parameter which is automatically computed by MEGA.

Best regards,
Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu