MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0006134MEGA[All Projects] Feedbackpublic2023-10-10 01:322023-10-10 01:32
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformOSOS Version
Product VersionMEGA-CC 11 (command line version) 
Target VersionFixed in Version 
First NameRamesh
Last NameEerapagula
Emailrameshe@cdfd.org.in
Confirm Emailrameshe@cdfd.org.in
Summary0006134: Reg.Usage of nodes and threads
DescriptionWhile running megacc in HPC (high-performance computing) by SLURM commands.
We have 20 nodes and each node contains 40 threads in hpc
while running megacc in 10 nodes ie., 400 threads it is not working
how should I use maximum nodes and threads?.

#!/bin/bash
#SBATCH --nodes=10
#SBATCH --ntasks-per-node=40
module load mega/10.2
megacc -a protein.mao -d test_05102023.meg -t ahyp_nbs.nwk

this is snippet of code.
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2023-10-10 01:32guestNew Issue

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