MantisBT - MEGA | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000625 | MEGA | Tree Explorer | public | 2017-12-18 03:07 | 2017-12-18 03:07 |
| Reporter | guest | ||||
| Assigned To | |||||
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | ||
| Platform | PC | OS | Windows | OS Version | 10 |
| Product Version | MEGA 11 (Graphical Interface version) | ||||
| Target Version | Fixed in Version | ||||
| First Name | gudrun | ||||
| Last Name | Gygli | ||||
| gudrun.gygli@wur.nl | |||||
| Confirm Email | gudrun.gygli@wur.nl | ||||
| Summary | 0000625: maximum likelihood method missing | ||||
| Description | Tree was built using maximum likelihood, but method for it is missing in MEGA (see additional information below). | ||||
| Steps To Reproduce | |||||
| Additional Information | Figure. Evolutionary relationships of taxa The evolutionary history was inferred using the None method [1]. The optimal tree with the sum of branch length = 22.89039079 is shown. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (500 replicates) are shown next to the branches [2]. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the Whelan And Goldman + Freq. method [3] and are in the units of the number of amino acid substitutions per site. The analysis involved 97 amino acid sequences. All ambiguous positions were removed for each sequence pair. There were a total of 721 positions in the final dataset. Evolutionary analyses were conducted in MEGA5 [4]. 1. Your computer is missing a file necessary to cite this source. Please inform the MEGA authors of this bug so we may correct it. 2. Felsenstein J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791. 3. Whelan, S. and Goldman, N. (2001). A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Molecular Biology and Evolution 18:691-699. 4. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., and Kumar S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution (In Press). Disclaimer: Although utmost care has been taken to ensure the correctness of the caption, the caption text is provided "as is" without any warranty of any kind. Authors advise the user to carefully check the caption prior to its use for any purpose and report any errors or problems to the authors immediately (www.megasoftware.net). In no event shall the authors and their employers be liable for any damages, including but not limited to special, consequential, or other damages. Authors specifically disclaim all other warranties expressed or implied, including but not limited to the determination of suitability of this caption text for a specific purpose, use, or application. | ||||
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| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2017-12-18 03:07 | guest | New Issue | |||
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