MantisBT - MEGA | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0006437 | MEGA | Tree Explorer | public | 2023-11-24 14:15 | 2023-11-24 14:15 |
| Reporter | guest | ||||
| Assigned To | |||||
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | ||
| Platform | OS | OS Version | |||
| Product Version | MEGA 11 (Graphical Interface version) | ||||
| Target Version | Fixed in Version | ||||
| First Name | Vera | ||||
| Last Name | Tai | ||||
| vtai4@uwo.ca | |||||
| Confirm Email | vtai4@uwo.ca | ||||
| Summary | 0006437: outgroup not included when exporting timetree | ||||
| Description | I am using RelTime-ML to calculate divergence times using MEGA11. After setting up and launching the analysis, the timetree in nexus format is missing the outgroup taxa. I can see the outgroup taxa in the original tree, and they outgroup taxa are rooting the timetree but they are in grey. However, when I export the TimeTree in nexus format, this tree is missing the outgroup taxa. How can I retain the outgroup taxa in the nexus tree format? In addition, I have done the exact same analysis with MEGA11, with the same data, on a different computer, and then I do get the outgroup taxa in my exported TimeTree in nexus format. So I am also wondering why there is this difference in the output between different MEGA11 installations. | ||||
| Steps To Reproduce | Load DNA alignment Choose RelTime-ML analysis. Load a tree, choose calibration points, set up options, i.e. GTR model with gamma distribution of rates with a proportion of invariants sites, and 4 rate categories. All sites included in the analysis. | ||||
| Additional Information | |||||
| Tags | No tags attached. | ||||
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| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2023-11-24 14:15 | guest | New Issue | |||
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