MantisBT - MEGA | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0006529 | MEGA | Tree Explorer | public | 2024-03-23 17:31 | 2024-03-23 17:31 |
| Reporter | guest | ||||
| Assigned To | |||||
| Priority | normal | Severity | minor | Reproducibility | have not tried |
| Status | new | Resolution | open | ||
| Platform | PC | OS | Windows | OS Version | 10 |
| Product Version | MEGA 11 (Graphical Interface version) | ||||
| Target Version | Fixed in Version | ||||
| First Name | Jakub | ||||
| Last Name | SusoĊ | ||||
| susolek@gmail.com | |||||
| Confirm Email | susolek@gmail.com | ||||
| Summary | 0006529: MEGA 11 Crashes on ML tree with substitution models | ||||
| Description | I have a small dataset to analyze (32 short (0001555:0001350 nt) sequences) that I am trying to run Maximum Likelyhood phylogeny analysis with kimura 2-parameter model and 250 bootstrap (tried from 1000 down same results), and the Program crashes on bootstraping around 50-100 bootstraps in, or freezes around 60th bootstrap and just hangs without doing much. | ||||
| Steps To Reproduce | Load in provided sequence alignment in analyze mode Protein coding sequences = Yes Phylogeny -> Construct/Test Maximum Likelihood tree Bootstrap = 250 Model = Kimura 2-parameter model Rates among sites = Gamma distributed with invariant sites (G+I) Gaps/Missing Data Treatment = Partial deletion Cutoff = 80% Number of threads = 8 | ||||
| Additional Information | |||||
| Tags | No tags attached. | ||||
| Relationships | |||||
| Attached Files |  16S_consensus_BLAST_aln.fas (52,360) 2024-03-23 17:31https://megasoftware.net/mantis_bt/ | ||||
| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2024-03-23 17:31 | guest | New Issue | |||
| 2024-03-23 17:31 | guest | File Added: 16S_consensus_BLAST_aln.fas | |||
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