MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000655MEGA[All Projects] Feedbackpublic2018-02-06 04:212023-04-14 00:37
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusassignedResolutionreopened 
PlatformOSOS Version
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
First NameStefano
Last NameScilipoti
Emailsscilipo@mpi-bremen.de
Confirm Emailsscilipo@mpi-bremen.de
Summary0000655: From Tree to Alignment
DescriptionGood morning MEGA support,

Here's my enquiry: is there a way to select sequences in a tree and then transfer this selection to the alignment?

I have a tree with many sequences, ca. 600. I want to trim the sequences eliminating all polyphyletic groups which are well shown in a NJ tree. Once I select all sequences I want to remove (or those I want to keep) is there a way to tell the software 'hey, build an alignment just with the sequences I selected'?

I hope in your support,

Best

Stefano
Steps To Reproduce
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Issue History
Date ModifiedUsernameFieldChange
2018-02-06 04:21guestNew Issue
2018-02-07 08:26gstecherNote Added: 0003911
2018-02-07 08:26gstecherStatusnew => resolved
2018-02-07 08:26gstecherResolutionopen => no change required
2018-02-07 08:26gstecherAssigned To => gstecher
2023-04-13 23:08guestNote Added: 0006164
2023-04-13 23:08guestStatusresolved => feedback
2023-04-13 23:08guestResolutionno change required => reopened
2023-04-14 00:37guestNote Added: 0006171
2023-04-14 00:37guestStatusfeedback => assigned

Notes
(0000594)
paul   
1969-12-31 17:33   
The problem can not be reproduced. Ask user for his data.
(0000608)
paul   
1969-12-31 17:33   
User found the problem by himself, it is not a MEGA bug. Close.
(0003911)
gstecher   
2018-02-07 08:26   
Hi Stefano,

I am writing in response to your question regarding the MEGA software. To construct a phylogeny with a subset of sequences in an alignment, you can either uncheck the unwanted sequences in the Sequence Data Explorer or use the Taxa/Groups dialog to group sequences together and then uncheck the unwanted group there.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu
(0006164)
guest   
2023-04-13 23:08   
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(0006171)
guest   
2023-04-14 00:37   
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