MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000683MEGA[All Projects] Feedbackpublic2018-03-06 19:092018-03-13 07:33
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product VersionMEGA-CC 11 (command line version) 
Target VersionFixed in Version 
First NameTuan
Last NameNguyen
Emailtnguyen@usc.edu.au
Confirm Emailtnguyen@usc.edu.au
Summary0000683: MEGACC not using cores as specified
DescriptionHello there,

I recently installed MEGA-CC on my university computer cluster and attempt to use it to generate a Maximum likelihood phylogeny. I use megaproto to generate the *.mao file to use 128 threads. However, when I use megacc to run the analysis, resource manager in Ubuntu shown that it not using all 128 of the core specified (usually 3-4 cores).

Please assist,

Regards,

Tuan
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Issue History
Date ModifiedUsernameFieldChange
2018-03-06 19:09guestNew Issue
2018-03-13 07:33gstecherNote Added: 0003946
2018-03-13 07:33gstecherStatusnew => resolved
2018-03-13 07:33gstecherResolutionopen => no change required
2018-03-13 07:33gstecherAssigned To => gstecher

Notes
(0000632)
paul   
1969-12-31 17:33   
Reply to user that MEGA4 runs perfectly on vista. Close.
(0003946)
gstecher   
2018-03-13 07:33   
Hi Tuan,

I am writing in response to your question regarding the MEGA-CC software. MEGA-CC is not an application that can be distributed across multiple nodes in a computing cluster. Instead, it runs on a single computer and can only access the cores on that computer.


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Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu