MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000700MEGA[All Projects] Feedbackpublic2018-03-12 22:342018-03-13 07:27
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product VersionMEGA-CC 11 (command line version) 
Target VersionFixed in Version 
First NameShijie
Last NameFAN
Email729502425@qq.com
Confirm Email729502425@qq.com
Summary0000700: Can I use nohup in MEGA-CC?
DescriptionI am a Chinese user who starts to learn Linux. My Linux system is CentOS and I just download other linux version. After 'tar' the package, I write alias in .bashrc but I failed to use nohup function to make MEGA-CC working behind.
When comparing over 20 sequences of gene with clustalW, I feel it really important to use 'nohup &' because MEGA-CC only use 6% of my CPU (Can it work in multithreading？) and I have to wait long time. I want to use ramaining cores to do docking or else.Please help.
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Date ModifiedUsernameFieldChange
2018-03-12 22:34guestNew Issue
2018-03-13 07:27gstecherNote Added: 0003945
2018-03-13 07:27gstecherStatusnew => resolved
2018-03-13 07:27gstecherResolutionopen => no change required
2018-03-13 07:27gstecherAssigned To => gstecher

Notes
(0003945)
gstecher   
2018-03-13 07:27   
Hi Shijie,

I am writing in response to your question regarding the MEGA-CC software. Yes, you can use nohup to run megacc on Linux. Just call it like:

nohup megacc -a settings.mao -d seqdata.fas

As far as multithreading, the ClustalW implementation in megacc is not multithreaded. If you have an alignment that is taking a long time you can use the MUSCLE option in megacc instead of ClustalW.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu