MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000703MEGA[All Projects] Feedbackpublic2018-03-15 08:392018-03-15 08:39
Reporterguest 
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PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformOSOS Version
Product Version 
Target VersionFixed in Version 
First NameJonathan
Last NameSchulz
Emailjonathan.schulz@nih.gov
Confirm Emailjonathan.schulz@nih.gov
Summary0000703: Issues with MEGA7 and dN/dS
DescriptionHello,

I made an alignment and fed it into Hyphy. However, the output does not record the correct number of codons I put in. I understand there may be gaps in the sequence, but if it doesn't account for certain gaps, then the codon number is wrong and I can not correlate the dN/dS value to a particular codon. This is especially annoying when I am trying to compare dN/dS values to various sequence lengths of one alignment. I can not say which codons are to what value.

any suggestions?
Jon
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Date ModifiedUsernameFieldChange
2018-03-15 08:39guestNew Issue
2018-03-15 09:52gstecherNote Deleted: 0000639
2018-03-15 09:52gstecherNote Deleted: 0000641
2018-03-15 14:26gstecherFile Deleted: Gamma_betaroot_align2.mas

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