MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000706MEGA[All Projects] Feedbackpublic2018-03-24 10:132018-03-27 12:41
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product Version 
Target VersionFixed in Version 
First NameIvo
Last NameTosevski
Emailtosevski_ivo@yahoo.com
Confirm Emailtosevski_ivo@yahoo.com
Summary0000706: Question regarding CLUSTALW
DescriptionDear Sir,

I am using MEGA 5. One of the reviewer asked me about what version of ClustalW is integrated in MEGA 5.

Thank you in advance,

Dr Ivo Tosevski
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Issue History
Date ModifiedUsernameFieldChange
2018-03-24 10:13guestNew Issue
2018-03-27 12:41gstecherNote Added: 0003953
2018-03-27 12:41gstecherStatusnew => resolved
2018-03-27 12:41gstecherResolutionopen => no change required
2018-03-27 12:41gstecherAssigned To => gstecher

Notes
(0000642)
paul   
1969-12-31 17:33   
The bug is true.
(0000658)
paul   
1969-12-31 17:33   
Sudhir fixed the bug. Close.
(0003953)
gstecher   
2018-03-27 12:41   
Hi Ivo,

I am writing in response to your question regarding the ClustalW implementation in MEGA. The version of ClustalW that is used in MEGA5 is the one described in the paper listed below:

Higgins D., Thompson J., Gibson T. Thompson J. D., Higgins D. G., Gibson T. J.
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Nucleic Acids Res. 22:4673-4680. (1994)

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu