MantisBT - MEGA
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0000841MEGA[All Projects] Feedbackpublic2018-07-03 11:042018-08-03 11:23
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Timothy
Butterfield
tsbutterfield@ucdavis.edu
tsbutterfield@ucdavis.edu
0000841: Ancestral Sequences Truncated
Hello,

I recently performed a protein phylogenetic analysis MEGA X (Win); the resulting tree contained approx 3500 nodes.

The exported ancestral sequences were truncated in the .txt/.csv/.xlsx formats. e.g. 4 lines of '- - - ', three lines of '- - X - Y - Z - -', and three lines of '- - -'.

s the truncation due to the number of nodes in the file (~3500 nodes) and the size of the file? Is there a workaround to obtain the sequences of specific nodes?

Thank you,

Tim
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Issue History
2018-07-03 11:04guestNew Issue
2018-08-02 09:03gstecherNote Deleted: 0000782
2018-08-03 11:23gstecherAssigned To => gstecher
2018-08-03 11:23gstecherStatusnew => assigned
2018-08-03 11:23gstecherNote Added: 0004084

Notes
(0004084)
gstecher   
2018-08-03 11:23   
Hi Timothy,

I am writing in response to the bug report you recently submitted regarding the MEGA software. Sorry for the late response. I am not able to duplicate the error you described where exported ancestral sequences were truncated. Could you send me the data file that was used along with a screenshot of the settings used so I can duplicate the issue? Also, can you send me the exported result so I can see exactly what it looks like? Thanks.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu