MantisBT - MEGA
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IDProjectCategoryView StatusDate SubmittedLast Update
0000893MEGA[All Projects] Feedbackpublic2018-08-13 19:232018-08-14 13:58
Reporterguest 
Assigned Togstecher 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusresolvedResolutionno change required 
PlatformOSOS Version
Product VersionMEGA-CC 11 (command line version) 
Target VersionFixed in Version 
First NameAnthony
Last NameS
Emailazerty3141@yahoo.fr
Confirm Emailazerty3141@yahoo.fr
Summary0000893: trees between group
DescriptionI have 5 groups of protein obtained from various species.
I would like draw a tree that display the overall distance between each specie (i.e a tree with only 5 taxa corresponding to each of my species)
Currently, the tree that I can obtain using MEGA X is quite mess with all the proteins mixed and sorted according to their homogy.
Mega is able to calculate a distance matrix between each species but I can't find where to generate a tree using those information.
Can you help?
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Issue History
Date ModifiedUsernameFieldChange
2018-08-13 19:23guestNew Issue
2018-08-14 07:17gstecherNote Deleted: 0000819
2018-08-14 13:58gstecherNote Added: 0004094
2018-08-14 13:58gstecherStatusnew => resolved
2018-08-14 13:58gstecherResolutionopen => no change required
2018-08-14 13:58gstecherAssigned To => gstecher

Notes
(0004094)
gstecher   
2018-08-14 13:58   
Hi Anthony,

I am writing in response to your question regarding the MEGA software. From your question it sounds like you want to generate a tree where sequence data are grouped by species. To do so you can do the following:

    Compute between-group distances for your data
    Export the distance matrix to a MEGA formatted file (.meg)
    Open the .meg file in MEGA
    Construct a Neighbor-Joining, Minimum Evolution, or UPGMA tree.

--
Best regards,

Glen Stecher
Institute for Genomics and Evolutionary Medicine
igem.temple.edu