This performs
various tree computations, including Condensed tree When interior branches in a phylogenetic tree do not have statistically significant lengths, choosing this command condenses the tree into a topology in which each branch with less than the desired statistical significance is collapsed.RH_Condensed_Tree, Time
TreeOverview,
and Consensus tree The MP method produces many equally parsimonious trees. Choosing this command produces a composite tree that is a consensus among all such trees, for example, either as a strict consensus, in which all conflicting branching patterns among the trees are resolved by making those nodes multifurcating or as a Majority-Rule consensus, in which conflicting branching patterns are resolved by selecting the pattern seen in more than 50% of the trees. (Details are given in Nei and Kumar [2000], page 130).,RH_Consensus_Tree