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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||||||
| 0005335 | MEGA | [All Projects] Feedback | public | 2023-07-06 22:52 | 2023-07-06 22:52 | ||||||||
| Reporter | guest | ||||||||||||
| Assigned To | |||||||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||||||
| Status | new | Resolution | open | ||||||||||
| Platform | PC | OS | Windows | ||||||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||||||
| Target Version | Fixed in Version | ||||||||||||
| Summary | 0005335: Software crashes while creating phylogenetic tree | ||||||||||||
| Description | Report bugs or other issues regarding the MEGA software When I create a phylogenetic tree using the attached file, the software crashes in the middle of creation.（Neighbor-Joining tree） | ||||||||||||
| Steps To Reproduce | 1.Open the attached aligned file in MEGA11 (protein sequence) 2.Select "Construct/Test Neighbor-Jointing Tree" 3. configure as follows Test of phylogeny → Bootstrap method No. of Bootstrap Replications → 100 Model/Method → Poisson model Rates among sites → Uniform Rates Gaps/Missing Data Treatment → Pairwise deletion Number of Threads → 7 4. Execute. | ||||||||||||
| Tags | No tags attached. | ||||||||||||
| Attach Tags | (Separate by ",") | ||||||||||||
| First Name | Tasuku | ||||||||||||
| Last Name | Yoshida | ||||||||||||
| yoshida.tasuku.q0@elms.hokudai.ac.jp | |||||||||||||
| Confirm Email | yoshida.tasuku.q0@elms.hokudai.ac.jp | ||||||||||||
| Attached Files |  3domain&803TPase235~264.fasta (2,362,959 bytes) 2023-07-06 22:52 | ||||||||||||
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(0003358) user614 1969-12-31 17:33 |
Hi Martin, I am writing in response to the bug report you recently submitted regarding the MEGA software. The rule that MEGA is using when exporting the alignment is to not split codons. So if you have coding data, the number of sites on a given line should always be a multiple of 3. Hope this helps. Best regards, Glen Stecher Application Programmer |
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Issue History |
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| Date Modified | Username | Field | Change |
| 1969-12-31 17:33 | user614 | Note Added: 0003358 | |
| 1969-12-31 17:33 | user614 | Status | new => resolved |
| 1969-12-31 17:33 | user614 | Resolution | open => no change required |
| 1969-12-31 17:33 | user614 | Assigned To | => user614 |
| 2023-07-06 22:52 | guest | New Issue | |
| 2023-07-06 22:52 | guest | File Added: 3domain&803TPase235~264.fasta | |
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Issue History |
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