0000866: megacc is linked against X11 libraries

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Category

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Date Submitted

Last Update

0000866

MEGA

Installation

public

2018-07-24 14:31

2018-07-31 11:27

Reporter

guest

Assigned To

gstecher

Priority

normal

Severity

minor

Reproducibility

have not tried

Status

resolved

Resolution

not fixable

Platform

Linux

Product Version

MEGA-CC 11 (command line version)

Target Version

Fixed in Version

Summary

0000866: megacc is linked against X11 libraries

Description

Sorry, I used the general feedback form first. It looks like megacc-7.0.26 is improperly linked against X11 libraries, so I cannot run it in a batch job on a compute cluster.

Steps To Reproduce

$ ldd mega/7.0.20/bin/megacc
        linux-vdso.so.1 => (0x00007ffc91f4e000)
        libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b1b88372000)
        libdl.so.2 => /lib64/libdl.so.2 (0x00002b1b8858f000)
        libc.so.6 => /lib64/libc.so.6 (0x00002b1b88793000)
        /lib64/ld-linux-x86-64.so.2 (0x000055d76d2c5000)

$ ldd mega/7.0.26/bin/megacc
        linux-vdso.so.1 => (0x00007ffe40313000)
        libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b2704d83000)
        libdl.so.2 => /lib64/libdl.so.2 (0x00002b2704fa0000)
        libX11.so.6 => /lib64/libX11.so.6 (0x00002b27051a4000)
        libgdk_pixbuf-2.0.so.0 => /lib64/libgdk_pixbuf-2.0.so.0 (0x00002b27054e2000)
        libgtk-x11-2.0.so.0 => /lib64/libgtk-x11-2.0.so.0 (0x00002b270570b000)
        libgdk-x11-2.0.so.0 => /lib64/libgdk-x11-2.0.so.0 (0x00002b2705d8d000)
        libgobject-2.0.so.0 => /lib64/libgobject-2.0.so.0 (0x00002b270604e000)
        libglib-2.0.so.0 => /lib64/libglib-2.0.so.0 (0x00002b270629f000)
        libgthread-2.0.so.0 => /lib64/libgthread-2.0.so.0 (0x00002b27065b1000)
        libgmodule-2.0.so.0 => /lib64/libgmodule-2.0.so.0 (0x00002b27067b3000)
        libpango-1.0.so.0 => /lib64/libpango-1.0.so.0 (0x00002b27069b8000)
        libcairo.so.2 => /lib64/libcairo.so.2 (0x00002b2706c03000)
        libatk-1.0.so.0 => /lib64/libatk-1.0.so.0 (0x00002b2706f2b000)
        libc.so.6 => /lib64/libc.so.6 (0x00002b2707152000)
        /lib64/ld-linux-x86-64.so.2 (0x00005624632ed000)
        libxcb.so.1 => /lib64/libxcb.so.1 (0x00002b2707515000)
        libgio-2.0.so.0 => /lib64/libgio-2.0.so.0 (0x00002b270773d000)
        libpng15.so.15 => /lib64/libpng15.so.15 (0x00002b2707ad2000)
        libm.so.6 => /lib64/libm.so.6 (0x00002b2707cfd000)
        libpangocairo-1.0.so.0 => /lib64/libpangocairo-1.0.so.0 (0x00002b2707fff000)
        libXfixes.so.3 => /lib64/libXfixes.so.3 (0x00002b270820d000)
        libpangoft2-1.0.so.0 => /lib64/libpangoft2-1.0.so.0 (0x00002b2708413000)
        libfontconfig.so.1 => /lib64/libfontconfig.so.1 (0x00002b2708629000)
        libXrender.so.1 => /lib64/libXrender.so.1 (0x00002b2708867000)
        libXinerama.so.1 => /lib64/libXinerama.so.1 (0x00002b2708a72000)
        libXi.so.6 => /lib64/libXi.so.6 (0x00002b2708c75000)
        libXrandr.so.2 => /lib64/libXrandr.so.2 (0x00002b2708e86000)
        libXcursor.so.1 => /lib64/libXcursor.so.1 (0x00002b2709091000)
        libXcomposite.so.1 => /lib64/libXcomposite.so.1 (0x00002b270929c000)
        libXdamage.so.1 => /lib64/libXdamage.so.1 (0x00002b27094a0000)
        libXext.so.6 => /lib64/libXext.so.6 (0x00002b27096a3000)
        libpcre.so.1 => /lib64/libpcre.so.1 (0x00002b27098b5000)
        libffi.so.6 => /lib64/libffi.so.6 (0x00002b2709b18000)
        libthai.so.0 => /lib64/libthai.so.0 (0x00002b2709d20000)
        libpixman-1.so.0 => /lib64/libpixman-1.so.0 (0x00002b2709f2d000)
        libfreetype.so.6 => /lib64/libfreetype.so.6 (0x00002b270a1d6000)
        libEGL.so.1 => /lib64/libEGL.so.1 (0x00002b270a47c000)
        libxcb-shm.so.0 => /lib64/libxcb-shm.so.0 (0x00002b270a6aa000)
        libxcb-render.so.0 => /lib64/libxcb-render.so.0 (0x00002b270a8ae000)
        libz.so.1 => /lib64/libz.so.1 (0x00002b270aabc000)
        libGL.so.1 => /lib64/libGL.so.1 (0x00002b270acd3000)
        librt.so.1 => /lib64/librt.so.1 (0x00002b270af45000)
        libXau.so.6 => /lib64/libXau.so.6 (0x00002b270b14d000)
        libselinux.so.1 => /lib64/libselinux.so.1 (0x00002b270b352000)
        libresolv.so.2 => /lib64/libresolv.so.2 (0x00002b270b579000)
        libmount.so.1 => /lib64/libmount.so.1 (0x00002b270b793000)
        libharfbuzz.so.0 => /lib64/libharfbuzz.so.0 (0x00002b270b9d6000)
        libexpat.so.1 => /lib64/libexpat.so.1 (0x00002b270bc39000)
        libX11-xcb.so.1 => /lib64/libX11-xcb.so.1 (0x00002b270be64000)
        libxcb-dri2.so.0 => /lib64/libxcb-dri2.so.0 (0x00002b270c066000)
        libxcb-xfixes.so.0 => /lib64/libxcb-xfixes.so.0 (0x00002b270c26b000)
        libxcb-dri3.so.0 => /lib64/libxcb-dri3.so.0 (0x00002b270c474000)
        libxcb-present.so.0 => /lib64/libxcb-present.so.0 (0x00002b270c677000)
        libxcb-sync.so.1 => /lib64/libxcb-sync.so.1 (0x00002b270c87a000)
        libxshmfence.so.1 => /lib64/libxshmfence.so.1 (0x00002b270ca82000)
        libgbm.so.1 => /lib64/libgbm.so.1 (0x00002b270cc84000)
        libdrm.so.2 => /lib64/libdrm.so.2 (0x00002b270ce90000)
        libglapi.so.0 => /lib64/libglapi.so.0 (0x00002b270d0a0000)
        libxcb-glx.so.0 => /lib64/libxcb-glx.so.0 (0x00002b270d2cf000)
        libXxf86vm.so.1 => /lib64/libXxf86vm.so.1 (0x00002b270d4ea000)
        libblkid.so.1 => /lib64/libblkid.so.1 (0x00002b270d6f1000)
        libuuid.so.1 => /lib64/libuuid.so.1 (0x00002b270d930000)
        libgraphite2.so.3 => /lib64/libgraphite2.so.3 (0x00002b270db36000)
        libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b270dd64000)

Notes
(0004059) gstecher (administrator) 2018-07-31 11:27	Hi Oleksandr, I am writing in response to the bug report you recently submitted regarding the MEGA software. Unfortunately, MEGA-CC has dependencies on GTK graphics libraries for historical reasons (MEGA was originally written as a GUI application) and therefore does not run easily on a headless server. The workaround is to use X11 forwarding using SSH. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu

Issue History
Date Modified	Username	Field	Change
2018-07-24 14:31	guest	New Issue
2018-07-30 07:26	gstecher	Note Deleted: 0000803
2018-07-31 11:27	gstecher	Note Added: 0004059
2018-07-31 11:27	gstecher	Status	new => resolved
2018-07-31 11:27	gstecher	Resolution	open => not fixable
2018-07-31 11:27	gstecher	Assigned To	=> gstecher

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