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IDProjectCategoryView StatusDate SubmittedLast Update
0001719MEGADistance Data Explorerpublic2020-01-16 09:462023-04-14 19:11
Reporterguest 
Assigned To 
PrioritynormalSeverityminorReproducibilityhave not tried
StatusnewResolutionopen 
PlatformPCOSWindows 
Product VersionMEGA 11 (Graphical Interface version) 
Target VersionFixed in Version 
Summary0001719: List index (-1) out of bounds erorr
DescriptionPerforming more than two pairwise distance analyses causes the third analysis to generate the following error code:

"Oh no!" An error occurred when setting up the options dialog: List index (-1) out of bounds"

No additional pairwise distance analyses can be performed as it prevents selection of analysis criteria and the analysis itself.

The error code is "fixed" by deleting the MEGAX cache files (entire MEGAX folder) in the ".../AppData/Local" section of the users files on Windows. The error resumes following an additional two pairwise distance analyses.

This error seems to generate only after using my specific distance parameters:

Bootstrap method: 500
nucleotide
p-distance
d: transitions + transversions
Gamma distributed with invariant sites (G+ I+)
Gamma parameter 8.0
Pairwise deletion
1st, 2nd, 3rd, and noncoding sites selected

I tested using the default settings and was able to proceed beyond the 3rd analysis indefinitely.
Steps To Reproduce1. Load multiple sequence alignment into MEGA
2. Press "Analyze"
3. Press "Distance" --> "Compute Pairwise Distance ..."
4. Run using above parameters
5. Repeat steps 1 to 4
6. Repeat steps 1 - 4 (should now fail)
TagsNo tags attached.
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First NameAlex
Last NameUmbach
Emailaumbach@uwaterloo.ca
Confirm Emailaumbach@uwaterloo.ca
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-  Notes
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- Issue History
Date Modified Username Field Change
2020-01-16 09:46 guest New Issue
2022-03-08 07:01 guest Note Added: 0004861
2023-04-14 19:11 guest Note Added: 0006921

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