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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0002841 | MEGA | [All Projects] Feedback | public | 2021-05-25 05:55 | 2021-05-27 07:51 | ||||
| Reporter | guest | ||||||||
| Assigned To | gstecher | ||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||
| Status | resolved | Resolution | no change required | ||||||
| Platform | OS | ||||||||
| Product Version | MEGA 11 (Graphical Interface version) | ||||||||
| Target Version | Fixed in Version | ||||||||
| Summary | 0002841: Mega X | ||||||||
| Description | How do I add superscript in text format phylogeny tree and also italics mainly genus and species not strain number or accession | ||||||||
| Tags | No tags attached. | ||||||||
| Attach Tags | (Separate by ",") | ||||||||
| First Name | Sumanta | ||||||||
| Last Name | Das | ||||||||
| sumantad1991@gmail.com | |||||||||
| Confirm Email | sumantad1991@gmail.com | ||||||||
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(0002275) user614 1969-12-31 17:33 |
Hello James, I am responding to the bug report you submitted regarding the failed install of MEGA on your RedHat machine. Would it be possible for you to run the MEGA5_Setup_rpm_v2.sh install script again and redirect the output to a text file ( ./MEGA5_Setup_rpm_v2.sh > installationOutput.txt) and email it to me. This might give us some insight into the problem. Also, if there was a random problem with downloading the archive, trying again might resolve the issue. Best regards, Glen Stecher |
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(0002281) user614 1969-12-31 17:33 |
[root@noah Desktop]# sh MEGA5_Setup_rpm.sh > installationOutput.txt [root@noah Desktop]# sh MEGA5_Setup_rpm.sh About to add EPEL repo to install wine. If you already have wine installed, you may skip this step. Add EPEL repository [y]y Which version of RedHat do you have (you can run 'cat /proc/version' to find out) Type 4, 5 or 6? [6]4 Retrieving http://download.fedora.redhat.com/pub/epel/5/i386/epel-release-5-4.noarch.rpm [^] Preparing... ########################################### [100%] package epel-release-5-4.noarch is already installed About to add megasoftware repository necessary in order to install MEGA Add megasoftware repository (mandatory) [y] Creating repository entry in /etc/yum.repos.d/ as megasoftware.repo. megasoftware repository added successfully Now installing mega via 'yum install mega' Loaded plugins: rhnplugin, security Repository 'mega' is missing name in configuration, using id epel | 3.7 kB 00:00 mega | 951 B 00:00 jpackage-generic-updates | 2.3 kB 00:00 jpackage-generic | 2.3 kB 00:00 rhel-x86_64-client-5 | 1.4 kB 00:00 Setting up Install Process Parsing package install arguments Resolving Dependencies --> Running transaction check ---> Package mega.noarch 0:5.05-5110426 set to be updated --> Finished Dependency Resolution Dependencies Resolved =============================================================================================================== Package Arch Version Repository Size =============================================================================================================== Installing: mega noarch 5.05-5110426 mega 1.1 M Transaction Summary =============================================================================================================== Install 1 Package(s) Update 0 Package(s) Remove 0 Package(s) Total download size: 1.1 M Is this ok [y/N]: yDownloading Packages: mega-5.05-5110426.noarch.rpm | 1.1 MB 00:00 Running rpm_check_debug Running Transaction Test Finished Transaction Test Transaction Test Succeeded Running Transaction Installing : mega [1/1] Error unpacking rpm package mega-5.05-5110426.noarch error: unpacking of archive failed on file /usr/local/lib/MEGA/Installers/MozillaFiles/components/dom_html.xpt;4ddd4a8f: cpio: read Installed: mega.noarch 0:5.05-5110426 Complete! [root@noah Desktop]# mega Installing Fonts for improved viewing /bin/cp: omitting directory `/bin' /bin/cp: omitting directory `/boot' /bin/cp: omitting directory `/dev' /bin/cp: omitting directory `/etc' /bin/cp: omitting directory `/home' /bin/cp: omitting directory `/lib' /bin/cp: omitting directory `/lib64' /bin/cp: omitting directory `/lost+found' /bin/cp: omitting directory `/media' /bin/cp: omitting directory `/misc' /bin/cp: omitting directory `/mnt' /bin/cp: omitting directory `/net' /bin/cp: omitting directory `/opt' /bin/cp: omitting directory `/opt2' /bin/cp: omitting directory `/opt3' /bin/cp: omitting directory `/proc' /bin/cp: omitting directory `/root' /bin/cp: omitting directory `/sbin' /bin/cp: omitting directory `/selinux' /bin/cp: omitting directory `/srv' /bin/cp: omitting directory `/sys' /bin/cp: omitting directory `/tarDir' /bin/cp: omitting directory `/testShare' /bin/cp: omitting directory `/tmp' /bin/cp: omitting directory `/usr' /bin/cp: omitting directory `/var' Executing MEGA ... MEGA Launched Wed May 25 13:30:22 CDT 2011 wine: cannot find '/usr/local/lib/MEGA/MEGA5.exe' |
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(0002282) user614 1969-12-31 17:33 |
Hello Jim, Thanks for sending me that output. You are correct, somehow our rpm got corrupted. It is fixed now so you should be able to run the install script. Please let me know if the install goes ok. Best regards, Glen Stecher |
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(0002297) user614 1969-12-31 17:33 |
Hello Jim, I apologize, we did not completely fix the problem with the repo. I am assured by my colleague that it is working correctly now. Best regards, Glen Stecher glen, now i am getting this error when i run the install. thanks, jim [root@noah Desktop]# sh MEGA5_Setup_rpm.sh About to add EPEL repo to install wine. If you already have wine installed, you may skip this step. Add EPEL repository [y]y Which version of RedHat do you have (you can run 'cat /proc/version' to find out) Type 4, 5 or 6? [6]4 Retrieving http://download.fedora.redhat.com/pub/epel/5/i386/epel-release-5-4.noarch.rpm [^] Preparing... ########################################### [100%] package epel-release-5-4.noarch is already installed About to add megasoftware repository necessary in order to install MEGA Add megasoftware repository (mandatory) [y]y Creating repository entry in /etc/yum.repos.d/ as megasoftware.repo. megasoftware repository added successfully Now installing mega via 'yum install mega' Loaded plugins: rhnplugin, security Repository 'mega' is missing name in configuration, using id mega | 951 B 00:00 Setting up Install Process Parsing package install arguments Resolving Dependencies --> Running transaction check ---> Package mega.noarch 0:5.05-5110426 set to be updated --> Finished Dependency Resolution Dependencies Resolved =================================================================================================================================== Package Arch Version Repository Size =================================================================================================================================== Installing: mega noarch 5.05-5110426 mega 1.1 M Transaction Summary =================================================================================================================================== Install 1 Package(s) Update 0 Package(s) Remove 0 Package(s) Total download size: 1.1 M Is this ok [y/N]: y Downloading Packages: mega-5.05-5110426.noarch.rpm | 27 MB 00:03 http://update.megasoftware.net/rpm/mega-5.05-5110426.noarch.rpm: [^] [Errno -1] Package does not match intended download Trying other mirror. Error Downloading Packages: mega-5.05-5110426.noarch: failure: mega-5.05-5110426.noarch.rpm from mega: [Errno 256] No more mirrors to try. |
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(0002556) user614 1969-12-31 17:33 |
We will be dropping support for Linux as of version 5.1 |
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(0004601) gstecher (administrator) 2021-05-27 07:51 |
Hi Sumanta, I am writing in response to your question regarding the MEGA software. The features you describe do not exist in MEGA. You might try using FigTree which can be used for making publication-ready and formatted trees. Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu |
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Notes |
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Issue History |
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| Date Modified | Username | Field | Change |
| 1969-12-31 17:33 | user614 | Note Added: 0002275 | |
| 1969-12-31 17:33 | user614 | Note Added: 0002281 | |
| 1969-12-31 17:33 | user614 | Note Added: 0002282 | |
| 1969-12-31 17:33 | user614 | Note Added: 0002297 | |
| 1969-12-31 17:33 | user614 | Note Added: 0002556 | |
| 1969-12-31 17:33 | user614 | Status | new => closed |
| 1969-12-31 17:33 | user614 | Resolution | open => won't fix |
| 2021-05-25 05:55 | guest | New Issue | |
| 2021-05-27 07:51 | gstecher | Note Added: 0004601 | |
| 2021-05-27 07:51 | gstecher | Status | new => resolved |
| 2021-05-27 07:51 | gstecher | Resolution | open => no change required |
| 2021-05-27 07:51 | gstecher | Assigned To | => gstecher |
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Issue History |
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