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ID | Project | Category | View Status | Date Submitted | Last Update | ||||||||
0003704 | MEGA | [All Projects] Feedback | public | 2022-05-24 14:23 | 2023-04-14 18:51 | ||||||||
Reporter | guest | ||||||||||||
Assigned To | |||||||||||||
Priority | normal | Severity | minor | Reproducibility | have not tried | ||||||||
Status | new | Resolution | open | ||||||||||
Platform | OS | ||||||||||||
Product Version | MEGA 11 (Graphical Interface version) | ||||||||||||
Target Version | Fixed in Version | ||||||||||||
Summary | 0003704: help interpreting selection test - conflicting info | ||||||||||||
Description | I ran a z-test codon test and the results: P "values", 0.00165, 1.000, and 0.0005, for Neutrality, Positive Selection, and Purifying Selection, respectively. The caption of the test says: "The probability of rejecting the null hypothesis of strict-neutrality (dN = dS) (Prob column)". I understand p-value, as the probability of observing a x value higher than the observed given a null hypothesis. Hope you can help me understand this. | ||||||||||||
Tags | No tags attached. | ||||||||||||
Attach Tags | (Separate by ",") | ||||||||||||
First Name | Juan Pablo | ||||||||||||
Last Name | Aguilar Cabezas | ||||||||||||
ja569116@ohio.edu | |||||||||||||
Confirm Email | ja569116@ohio.edu | ||||||||||||
Attached Files | |||||||||||||
Notes | |
(0002454) user614 1969-12-31 17:33 |
Hello Jutta, I am responding to your feature request for bootstrap analysis of phylogenies in MEGA5. This capability is available for all phylogeny inference methods. To perform bootstrap analysis, first select the desired tree making method under the phylogeny menu. Then, on the analysis preferences menu, select ‘bootstrap’ under the test of phylogeny item. Hope this helps! Best regards, Glen Stecher |
(0006664) guest (reporter) 2023-04-14 18:51 |
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Issue History | |||
Date Modified | Username | Field | Change |
1969-12-31 17:33 | user614 | Note Added: 0002454 | |
1969-12-31 17:33 | user614 | Status | new => resolved |
1969-12-31 17:33 | user614 | Resolution | open => no change required |
1969-12-31 17:33 | user614 | Assigned To | => user614 |
1969-12-31 17:33 | user614 | Tag Attached: how_to | |
2022-05-24 14:23 | guest | New Issue | |
2023-04-14 18:51 | guest | Note Added: 0006664 |
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