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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||||||
| 0000463 | MEGA | Timetree Wizard | public | 2017-05-26 13:20 | 2023-04-14 00:58 | ||||||||
| Reporter | guest | ||||||||||||
| Assigned To | gstecher | ||||||||||||
| Priority | normal | Severity | minor | Reproducibility | have not tried | ||||||||
| Status | assigned | Resolution | open | ||||||||||
| Platform | Mac | OS | OS X | ||||||||||
| Product Version | MEGA-CC 11 (command line version) | ||||||||||||
| Target Version | Fixed in Version | ||||||||||||
| Summary | 0000463: Timetree in MEGAcc does not run | ||||||||||||
| Description | Tried to perform a timetree in MEGA cc using Mac OS 10.11.6 but run gets interrupted. | ||||||||||||
| Steps To Reproduce | MEGA-CC 7.0.26 Molecular Evolutionary Genetics Analysis Build#: 7170509-x86_64 0% Organizing sequence information a MEGA-CC has logged the following warning: When = 26-5-17 16:05:10 Data file = 660_orthos_verified_concatenated.fasta AnalysisFile = ./reltime_ml_coding_26May2017.mao Tree File = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk Parameter = -t Parameter = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk Parameter = -g Parameter = groups.txt Parameter = -c Parameter = 660_orthos_calibration_time.txt Parameter = -o Parameter = out.txt Message = No Code table was specified, assuming the Genetic Code Table is 'Standard' Please see the summary file for warnings/messages Please validate all your inputs and try again. If you think this is a bug, please report it at http://www.megasoftware.net [^] 0% 26-5-17 16:05:10 Using the following analysis options: No. of Taxa 47 No. of Groups 1 Analysis Estimate Divergence Times (ML) Tree to Use Use tree from file Clock Type Local clocks Variance Estimation Method Analytical method No. of Bootstrap Replications Not Applicable Statistical Method Maximum Likelihood Substitutions Type Nucleotide Model/Method General Time Reversible model Rates among Sites Gamma Distributed (G) No of Discrete Gamma Categories 5 Gaps/Missing Data Treatment Use all sites Site Coverage Cutoff (%) Not Applicable Select Codon Positions 1st, 2nd, 3rd, Branch Swap Filter None Number of Threads 8 Genetic Code Table Not Applicable Genetic Code Not Applicable Has Time Limit False Maximum Execution Time -1 datatype snNucleotide containsCodingNuc True MissingBaseSymbol ? IdenticalBaseSymbol . GapSymbol - Start time: 26-5-17 16:05:10 Executing analysis: 0% Setting model parameters MEGA-CC has logged the following error: When = 26-5-17 16:05:22 Data file = 660_orthos_verified_concatenated.fasta AnalysisFile = ./reltime_ml_coding_26May2017.mao Tree File = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk Parameter = -t Parameter = RAxML_bipartitions_partitioned_by_gene.concatenated_newick.nwk Parameter = -g Parameter = groups.txt Parameter = -c Parameter = 660_orthos_calibration_time.txt Parameter = -o Parameter = out.txt Message = Failure in Reltime analysis Please see the summary file for warnings/messages Please validate all your inputs and try again. If you think this is a bug, please report it at http://www.megasoftware.net [^] | ||||||||||||
| Tags | No tags attached. | ||||||||||||
| Attach Tags | (Separate by ",") | ||||||||||||
| First Name | Marcos | ||||||||||||
| Last Name | Caraballo | ||||||||||||
| marcoscaraballo@gmail.com | |||||||||||||
| Confirm Email | marcoscaraballo@gmail.com | ||||||||||||
| Attached Files |  Error_MEGACC.txt (3,132 bytes) 2017-05-26 13:20 | ||||||||||||
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Issue History |
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| Date Modified | Username | Field | Change |
| 2017-05-26 13:20 | guest | New Issue | |
| 2017-05-26 13:20 | guest | File Added: Error_MEGACC.txt | |
| 2017-06-15 14:37 | gstecher | Assigned To | => gstecher |
| 2017-06-15 14:37 | gstecher | Status | new => assigned |
| 2017-06-15 14:37 | gstecher | Note Deleted: 0000514 | |
| 2017-06-15 14:37 | gstecher | Note Added: 0003814 | |
| 2022-12-05 07:03 | guest | Note Added: 0005912 | |
| 2023-04-14 00:58 | guest | Note Added: 0006427 | |
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Issue History |
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