0000608: Duplicate names

View Issue Details [ Jump to Notes ]

[ Issue History ] [ Print ]

Project

Category

View Status

Date Submitted

Last Update

0000608

MEGA

Alignment Explorer

public

2017-11-24 04:23

2017-11-28 08:46

Reporter

guest

Assigned To

gstecher

Priority

normal

Severity

minor

Reproducibility

have not tried

Status

resolved

Resolution

no change required

Platform

Windows

Product Version

MEGA-CC 11 (command line version)

Target Version

Fixed in Version

Summary

0000608: Duplicate names

Description

Doing the phylogenetics analysis with MEGA-CC I obtain the error "Tow seqeucnes with the same name, but data does not appear to be in the proper interleaved format. Check for duplicate naems (in line 8979).

First of all, I do not have line 8979 in my file. I have taken the data and I have checked if there are duplicate names but there are not. Moreover, I did the same analysis but using MEGA, with the same data, and I did not have the error.

I attach the output file of the alignment

How can I solve the problem? Thanks in advance.

Tags

No tags attached.

Attach Tags

(Separate by ",")

First Name

Marc

Last Name

Granés

mb2subi@gmail.com

Confirm Email

mb2subi@gmail.com

Attached Files

raw_align.meg (243,268 bytes) 2017-11-24 04:23

Relationships

Notes
(0003893) gstecher (administrator) 2017-11-28 08:46	Hi Marc, I am writing in response to your question regarding the MEGA software. Commas are not allowed in sequence names when using the .meg format for alignments. You should replace the sequence name Tg3,2 with something like Tg3_2. -- Best regards, Glen Stecher Institute for Genomics and Evolutionary Medicine igem.temple.edu

Issue History
Date Modified	Username	Field	Change
2017-11-24 04:23	guest	New Issue
2017-11-24 04:23	guest	File Added: raw_align.meg
2017-11-28 08:46	gstecher	Note Added: 0003893
2017-11-28 08:46	gstecher	Status	new => resolved
2017-11-28 08:46	gstecher	Resolution	open => no change required
2017-11-28 08:46	gstecher	Assigned To	=> gstecher